3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and Width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Bubble Graphs Bullet Graphs Chord Graphs Circular Graph Arc Sectors Circular Graph Connections Circular Graph Tracks Circular Graphs Citations or References Clustering Colors Combination Plot Strips Combination Plots Confidence Intervals Contours Correlation Graphs DOE Data Data Context Data Customizer Data Faceting Data Filters Data Point Attributes Data Ratio Reference Data Selection Data Sorting Data Table Data Table/Filter Data Time Series Data Transformation Data UI Widgets Debug Decorations Dendrograms Density Plots Dotplot Graphs Dumbbell Graphs Effect Error Bars Events Fish Graphs Fit Lines Foreground and Background Gantt Charts General General Attributes General One Dimensional Graphs Genome Browser Genome Browser Features Genome Browser Sequences Genome Browser Tracks Gradients Graph Metadata Grey Out HTML Widgets Heatmap Color Indicators Heatmap Graphs Hierarchy Histograms Ideograms Images Kaplan Meier Plots LLM Legends Line Graphs Lines Loess Lollipop Graphs Manhattan Plots Maps Maps Albers Maps Leaflet Maps Orthographic Marginal Text Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Cola Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Parallel Coordinates Graphs Pie Charts Plot Area Plot Data Type Plot Mode Plot Performance Plot View Plot and Panel Areas Print Quantile Regression Plots R R-Axis Random Ranges Regression Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Sizes Stream Plots Swimmer Graphs Tag Cloud Text Text Placement Titles and Subtitles Tooltip Transparency Tree Bracket Treemap Graphs Trees UpSet Plots Variables Venn Diagrams Violin Plots Visium Plots Waterfall Graphs X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot

Genome Browser Sequences : General parameters used in genome browser sequeces

# sequenceAColor
Color for the adenines and alanines in the genome browser
Type: color
Default: rgb(0,103,0)
Used in: Genome

# sequenceAlign
Alignment (or position) for the sequence
Type: string
Default: center
Options: left, center, right
Used in: Genome

# sequenceBColor
Color for the degenerate C/G/T and asparagines in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceBaseline
Baseline (or reference line) for the sequence
Type: string
Default: middle
Options: top, middle, bottom
Used in: Genome

# sequenceCColor
Color for the cytosines and cysteins in the genome browser
Type: color
Default: rgb(0,0,255)
Used in: Genome

# sequenceColor
Color for the text in sequence
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceDColor
Color for the degenerate A/G/T and aspartic acids in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceEColor
Color for the glutamic acids in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceEndColor
Color for the end codon in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceFColor
Color for the phenylalanines in the genome browser
Type: color
Default: rgb(0,0,255)
Used in: Genome

# sequenceFillColor
Color for the background when showing sequnces in the box or sequence object in the Genome. The default is to use the background of the object. If specied a valid color then all the background of sequences will be uniform
Type: color
Default: false
Used in: Genome

# sequenceFontSize
Font size for the text in sequence. Be aware that auto scaling font must be turned off for this property to take effect. A more convenient way to modify the size is to use the sequenceScaleFontFactor
Type: integer
Default: 11
Used in: Genome

# sequenceFontStyle
Font style for the sequence
Type: string
Default:
Options: , bold, italic, bold italic
Used in: Genome

# sequenceGAPColor
Color for the deletions, insertions and gaps in the genome browser
Type: color
Default: rgb(255,0,255)
Used in: Genome

# sequenceGColor
Color for the guanines and glycines in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceHColor
Color for the degenerate A/C/T and histidines in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceIColor
Color for the isoleucines in the genome browser
Type: color
Default: rgb(0,103,0)
Used in: Genome

# sequenceKColor
Color for the degenerate G/T and lysines in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceLColor
Color for the leucines in the genome browser
Type: color
Default: rgb(0,103,0)
Used in: Genome

# sequenceMColor
Color for the degenerate A/G and methionines in the genome browser
Type: color
Default: rgb(0,103,0)
Used in: Genome

# sequenceMargin
Margin to pad or separate the characters in the sequence
Type: float
Default: 8
Used in: Genome

# sequenceNColor
Color for the degenerate A/C/G/T and asparagines in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequencePColor
Color for the prolines in the genome browser
Type: color
Default: rgb(255,165,0)
Used in: Genome

# sequenceQColor
Color for the glutamines in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceRColor
Color for the degenerate A/G and arginines in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceRotate
Rotation in degrees for the sequence
Type: integer
Default:
Used in: Genome

# sequenceSColor
Color for the degenerate G/C and serines in the genome browser
Type: color
Default: rgb(255,165,0)
Used in: Genome

# sequenceScaleFontFactor
Scaling factor used to increase or decrease the sequence font size in the canvas
Type: float
Default: 1
Used in: Genome

# sequenceStartColor
Color for the start codon in the genome browser
Type: color
Default: rgb(0,204,0)
Used in: Genome

# sequenceTColor
Color for the thymidines and threonines in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceUColor
Color for the uracils in the genome browser
Type: color
Default: rgb(255,0,0)
Used in: Genome

# sequenceVColor
Color for the degenerate A/C/G and valines in the genome browser
Type: color
Default: rgb(0,103,0)
Used in: Genome

# sequenceWColor
Color for the degenerate A/T and tryptophans in the genome browser
Type: color
Default: rgb(0,0,255)
Used in: Genome

# sequenceXColor
Color for the any aminoacid code in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

# sequenceYColor
Color for the degenerate C/T and tyrosines in the genome browser
Type: color
Default: rgb(0,0,255)
Used in: Genome

# sequenceZColor
Color for the glutamines in the genome browser
Type: color
Default: rgb(0,0,0)
Used in: Genome

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