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Dendrograms : General parameters in dendrograms

# colorSmpDendrogramBy
Name of metadata annotation to color the sample (row) dendrogram
Type: string
Default:
Options: 0
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

colorSmpDendrogramBy : false

colorSmpDendrogramBy : "Treatment"


# colorVarDendrogramBy
Name of metadata annotation to color the variable (column) dendrogram
Type: string
Default:
Options: 0
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

colorVarDendrogramBy : false

colorVarDendrogramBy : "Lab"


# dendrogramColor
Color for the dendrograms
Type: color
Default: rgb(0,0,0)
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

dendrogramColor : "rgb(0,0,0)"

dendrogramColor : "green"


# dendrogramHeight
Size in pixels for the dendrogram
Type: integer
Default: 80
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

dendrogramHeight : 120

dendrogramHeight : 40


# showSmpDendrogram
Flag to show/hide the sample (row) dendrogram
Type: boolean
Default: true
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

showSmpDendrogram : true

showSmpDendrogram : false


# showVarDendrogram
Flag to show/hide the variable (column) dendrogram
Type: boolean
Default: true
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

showVarDendrogram : true

showVarDendrogram : false


# smpDendrogramHang
Flag to use extend the lines to the end of the terminal nodes when the newick is provided for the sample (row) dendrogram
Type: boolean
Default: true
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

smpDendrogramHang : true

smpDendrogramHang : false


# smpDendrogramNewick
Custom dendrogram in Newick format created outside CanvasXpress to define and specify the hierarchy for the sample (row) dendrogram.
Type: string
Default:
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

smpDendrogramNewick : false

smpDendrogramNewick : "(((6,((16,(20,22):2.4):2.8,(8,12):3.0):3.6):4.1,(10,(14,(18,24):2.7):3.8):4.9):5.2,((((5,15):2.9,(23,(9,19):2.3):3.2):3.6,(7,((17,21):2.7,(11,13):2.7):3.5):3.6):4.5,((0,(1,3):2.9):3.2,(2,4):4.0):4.6):6.5):8.7"


# smpDendrogramPosition
Position for the sample (row) dendrogram in the plot. It could be top, bottom, right or left depending on the orientation of the graph
Type: string
Default: left
Options: left, right
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

smpDendrogramPosition : "left"

smpDendrogramPosition : "right"


# smpDendrogramUseHeight
Boolean flag to allow the use of height in the provided Newick string for branch representation in the sample (row) dendrogram
Type: boolean
Default: false
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

smpDendrogramUseHeight : true

smpDendrogramUseHeight : false


# varDendrogramHang
Flag to use extend the lines to the end of the terminal nodes when the newick is provided for the variable (column) dendrogram
Type: boolean
Default: true
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

varDendrogramHang : true

varDendrogramHang : false


# varDendrogramNewick
Custom dendrogram in Newick format created outside CanvasXpress to define and specify the hierarchy for the variable (column) dendrogram.
Type: string
Default:
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

varDendrogramNewick : false

varDendrogramNewick : "((((9,14):2.7,((2,10):1.9,(4,8):2.4):3.6):4.0,((1,11):2.7,((7,12):2.8,((0,3):2.6,(5,(6,13):2.3):3.0):3.4):4.1):4.6):5.8,((21,((30,(16,18):2.2):2.4,(35,39):2.8):3.3):3.7,((37,(26,33):2.3):2.6,(((24,(32,(19,27):1.9):3.0):3.2,((22,38):2.0,(28,31):2.2):3.5):3.9,((20,36):3.0,((25,34):2.7,((15,29):1.9,(17,23):1.9):3.5):3.9):4.3):4.8):4.9):6.2):8.7"


# varDendrogramPosition
Position for the variable (column) dendrogram in the plot. It could be top, bottom, right or left depending on the orientation of the graph
Type: string
Default: top
Options: top, bottom
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

varDendrogramPosition : "top"

varDendrogramPosition : "bottom"


# varDendrogramUseHeight
Boolean flag to allow the use of height in the provided Newick string for branch representation in the variable (column) dendrogram
Type: boolean
Default: false
Used in: Area, AreaLine, Bar, BarLine, Boxplot, Circular, Correlation, DotLine, Dotplot, Dumbbell, Heatmap, Line, Stacked, StackedLine, StackedPercent, StackedPercentLine, Tree, Treemap

varDendrogramUseHeight : true

varDendrogramUseHeight : false


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