Getting Started
Overview
Installation
API
3D Attributes Animations and Visualization Transitions Area Graphs Aspect Ratio, Space and width Axis Bar Graphs Bin Plots Bins Boxplot Graphs Circular Graphs Citations or References Clustering Colors Combination Plots Contours Correlation Graphs DOE Data Data Customizer Data Filters Data Point Attributes Data Selection Data Table Data Table/Filter Data sorting Debug Decorations Dendrograms Density Plots Dotplot Graphs Effect Error Bars and Confidence Intervals Events Fish Graphs Foreground and Background Gantt Charts General General Attributes Genome Browser Gradients Heatmap Graphs Hierarchy Histograms Ideograms Images Legends Line Graphs Lines Loess Maps Margins Meter Graphs Missing Data Motion Charts Network Algorithm Parameters Network Communities Network Graphs Network Node and Edge Attributes Oncoprint Graphs Overlays Pie Charts Plot area Quantile Regression Plots R R-Axis Random Remote Procedures Ridgeline Plots Samples Sankey Diagrams Scatter Plot Matrix Scatter Plots Shadows Shapes Tag Cloud Text Time Series Titles and Subtitles Treemap Graphs Trees UpSet Plots Variables Venn Diagrams X-Axis Y-Axis Z-Axis Zooming, Panning and Resizing cxplot false

Ideograms : General parameters for Idegrams

# ideogram

Ideogram. Additional ideograms can be loaded by appending to the CanvasXpress.chromosomes object. The format of the ideogram is based on the R data for USCS.hg19.chr
}
Type: string
Default: hg38
Options: hg19, hg38
Used in: Circular, Genome

# ideogramChromosomeNumber

Chromosome number
Type: string
Default: 1
Used in: Circular, Genome

# ideogramHeight

Default size in pixels of the ideogram height
Type: integer
Default: 20
Used in: Circular, Genome

# ideogramSegmentAlign

Align for the ideogram segment
Type: string
Default: center
Options: left, center, right
Used in: Circular, Genome

# ideogramSegmentBaseline

Baseline for the ideogram segment
Type: string
Default: middle
Options: top, middle, bottom
Used in: Circular, Genome

# ideogramSegmentColor

Color for the text in ideogram segment
Type: color
Default: rgb(0,0,0)
Used in: Circular, Genome

# ideogramSegmentFontSize

Font size for the text in ideogram segment. Be aware that auto scaling font must be turned off for this property to take effect. A more convenient way to modify the size is to use the ideogramSegmentScaleFontFactor
Type: integer
Default: 10
Used in: Circular, Genome

# ideogramSegmentFontStyle

Font style for the ideogram segment
Type: string
Default:
Options: , bold, italic, bold italic
Used in: Circular, Genome

# ideogramSegmentMargin

Margin used in ideogram segment
Type: float
Default: 8
Used in: Circular, Genome

# ideogramSegmentRotate

Rotation in degrees for the ideogram segment
Type: integer
Default:
Used in: Circular, Genome

# ideogramSegmentScaleFontFactor

Scaling factor used to increase or decrease the ideogram segment font size in the canvas
Type: float
Default: 1
Used in: Circular, Genome

# ideogramShowFullChromosome

Show the full chromosome
Type: boolean
Default: true
Used in: Circular, Genome

# showIdeogram

Flag to show/hide the Human Chromosome Ideogram. Force circular plots to be two dimensional
Type: boolean
Default: false
Used in: Circular, Genome

⇧