Fish plots are designed to visualize tumor evolution. This visualizationwas inspired by the fishplot package for R by Christopher A. Miller, Joshua McMichael, Ha X. Dang, Christopher A. Maher, Li Ding, Timothy J. Ley, Elaine R. Mardis & Richard K. Wilson
<html> <head> <!-- Include the CanvasXpress library in your HTML file --> <link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/> <script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script> </head> <body> <!-- Create a canvas element for the chart with the desired dimensions --> <div> <canvas id="canvasId" width="600" height="600"></canvas> </div> <!-- Create a script to initialize the chart --> <script> // Create the data for the graph var data = { "y" : { "data" : [ [100,2,2,100], [38,0,0,0], [24,1,1,98], [0,0,1,30] ], "smps" : [0,30,200,423], "vars" : ["C1","C2","C3","C4"] } } // Create the configuration for the graph var config = { "backgroundType" : "panelSolidGradient", "colorSpectrum" : ["bisque","darkgoldenrod1","darkorange3"], "colors" : ["rgb(136,136,136)","rgb(239,0,0)","rgb(255,96,0)","rgb(255,207,0)","rgb(191,255,64)","rgb(80,255,175)","rgb(0,223,255)","rgb(0,112,255)","rgb(0,0,255)","rgb(0,0,143)"], "fishAxis" : [0,423], "fishCloneLabels" : ["DNMT3A,FLT3","NPM1","MET","ETV6,WNK1-WAC,\\nMYO18B"], "fishParents" : [0,1,1,3], "fishShape" : "spline", "fishTimepoints" : [0,30,200,423], "gradientOrientation" : "horizontal", "graphType" : "Fish", "legendKeyBackgroundBorderColor" : "rgba(255,255,255,0)", "legendKeyBackgroundColor" : "rgba(255,255,255,0)", "varTextColor" : "green", "varTextRotate" : 30, "xAxis" : ["C1","C2","C3","C4"] } // Event used to create graph (optional) var events = false // Call the CanvasXpress function to create the graph var cX = new CanvasXpress("canvasId", data, config, events); </script> </body> </html>
library(canvasXpress) y=read.table("https://www.canvasxpress.org/data/r/cX-fish2-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE) canvasXpress( data=y, backgroundType="panelSolidGradient", colorSpectrum=list("bisque", "darkgoldenrod1", "darkorange3"), colors=list("rgb(136,136,136)", "rgb(239,0,0)", "rgb(255,96,0)", "rgb(255,207,0)", "rgb(191,255,64)", "rgb(80,255,175)", "rgb(0,223,255)", "rgb(0,112,255)", "rgb(0,0,255)", "rgb(0,0,143)"), fishAxis=list(0, 423), fishCloneLabels=list("DNMT3A,FLT3", "NPM1", "MET", "ETV6,WNK1-WAC,\nMYO18B"), fishParents=list(0, 1, 1, 3), fishShape="spline", fishTimepoints=list(0, 30, 200, 423), gradientOrientation="horizontal", graphType="Fish", legendKeyBackgroundBorderColor="rgba(255,255,255,0)", legendKeyBackgroundColor="rgba(255,255,255,0)", varTextColor="green", varTextRotate=30, xAxis=list("C1", "C2", "C3", "C4") )