Fish Chart

Fish plots are designed to visualize tumor evolution. This visualizationwas inspired by the fishplot package for R by Christopher A. Miller, Joshua McMichael, Ha X. Dang, Christopher A. Maher, Li Ding, Timothy J. Ley, Elaine R. Mardis & Richard K. Wilson


Example Color Themes

Example Fonts



Show Code

Tools

<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/canvasXpress.min.js"></script>


<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
  <canvas id="canvasId" width="600" height="600"</canvas>
</div>


<!-- Create a script to initialize the chart -->
<script>

  <!-- Create the data for the graph -->
  var data = {
     "y" : {
        "data" : [
          [100,100],
          [98,44],
          [46,1],
          [1,55]
        ],
        "smps" : ["Primary","Post-AI"],
        "vars" : ["S1","S2","S3","S4"]
     }
  }
  
  
  <-- Create the configuration for the graph -->
  var config = {
     "backgroundType":"windowSolidGradient",
     "colorSpectrum":[
        "#ffe4c4",
        "#ffb90f",
        "#cd6600"
     ],
     "colors":[
        "#1B9E77",
        "#D95F02",
        "#7570B3",
        "#E7298A"
     ],
     "fishAxis":[
        "0",
        "120"
     ],
     "fishAxisLabels":[
        "Primary",
        "Post-AI"
     ],
     "fishParents":[
        "0",
        "1",
        "2",
        "1"
     ],
     "fishShape":"polygon",
     "fishTimepoints":[
        "0",
        "120"
     ],
     "gradientOrientation":"horizontal",
     "graphType":"Fish",
     "legendKeyBackgroundBorderColor":"rgba(255,255,255,0)",
     "legendKeyBackgroundColor":"rgba(255,255,255,0)",
     "title":"BRC32"
  }
  

  <!-- Call the CanvasXpress function to create the graph -->
  var cX = new CanvasXpress("canvasId", data, config);


</script>
library(canvasXpress)
y=read.table("https://www.canvasxpress.org/data/cX-fish3-dat.txt", header=TRUE, sep="\t", quote="", row.names=1, fill=TRUE, check.names=FALSE, stringsAsFactors=FALSE)
canvasXpress(
  data=y,
  backgroundType="windowSolidGradient",
  colorSpectrum=list("#ffe4c4", "#ffb90f", "#cd6600"),
  colors=list("#1B9E77", "#D95F02", "#7570B3", "#E7298A"),
  fishAxis=list(0, 120),
  fishAxisLabels=list("Primary", "Post-AI"),
  fishParents=list(0, 1, 2, 1),
  fishShape="polygon",
  fishTimepoints=list(0, 120),
  gradientOrientation="horizontal",
  graphType="Fish",
  legendKeyBackgroundBorderColor="rgba(255,255,255,0)",
  legendKeyBackgroundColor="rgba(255,255,255,0)",
  title="BRC32"
)