Heatmap Graphs

General parameters for heatmaps


Flag to adjust aspect ratio of heatmap indicator. It depends on the adjustAspectRatio parameter; that is, the adjustAspectRatio parameter has to set to true for the adjustAspectRatioHeatmapIndicator to take effect.
See also: adjustAspectRatio
Default: true
Used in: Heatmap
Flag to adjust aspect ratio of heatmap indicator. It depends on the adjustAspectRatio parameter; that is, the adjustAspectRatio parameter has to set to true for the adjustAspectRatioHeatmapIndicator to take effect.
See also: adjustAspectRatio
Default: true
Used in: Heatmap
Flag to adjust the range of the heatmaps when zooming in/out
Default: false
Used in: Heatmap
Flag to adjust the range of the heatmaps when zooming in/out
Default: false
Used in: Heatmap
heatmapCellBox boolean
Flag to print a box around the heatmap cells
Default: true
Used in: Heatmap
heatmapCellBox boolean
Flag to print a box around the heatmap cells
Default: true
Used in: Heatmap
Color for the heatmap boxes around the cells
Default: rgb(220,220,220)
Used in: Heatmap
Color for the heatmap boxes around the cells
Default: rgb(220,220,220)
Used in: Heatmap
Color for highlighting heatmap cells
Default: rgb(255,215,0)
Used in: Heatmap
Color for highlighting heatmap cells
Default: rgb(255,215,0)
Used in: Heatmap
Width for the highlighting heatmap boxes around the cells
Default: 1
Used in: Heatmap
Width for the highlighting heatmap boxes around the cells
Default: 1
Used in: Heatmap
Width for the heatmap boxes around the cells
Default: 0.5
Used in: Heatmap
Width for the heatmap boxes around the cells
Default: 0.5
Used in: Heatmap
Length in pixels for the heatmap indicator
Default: 20
Used in: Heatmap
Length in pixels for the heatmap indicator
Default: 20
Used in: Heatmap
Flag to show histogram in the heatmap indicator
Default: false
Used in: Heatmap
Flag to show histogram in the heatmap indicator
Default: false
Used in: Heatmap
Color for the heatmap indicator histogram
Default: rgb(0,255,255)
Used in: Heatmap
Color for the heatmap indicator histogram
Default: rgb(0,255,255)
Used in: Heatmap
Position for the heatmap indicator
Default: top
Options: topLeft, top, topRight, right
Used in: Heatmap
Position for the heatmap indicator
Default: top
Options: topLeft, top, topRight, right
Used in: Heatmap
Length in pixels for the heatmap indicator line width used for increase the size of the indicator
Default: 160
Used in: Heatmap
Length in pixels for the heatmap indicator line width used for increase the size of the indicator
Default: 160
Used in: Heatmap
Width for the heatmap separator
Default: 2.5
Used in: Heatmap
Width for the heatmap separator
Default: 2.5
Used in: Heatmap
Factor used to separate the heatmap
Default: false
Used in: Heatmap
Factor used to separate the heatmap
Default: false
Used in: Heatmap
Factor used to separate the heatmap
Default: false
Used in: Heatmap
Factor used to separate the heatmap
Default: false
Used in: Heatmap
isMultidimensionalData boolean Private
Flag to indicate if there is more than a single data set.
Default:
Used in: Heatmap
isMultidimensionalData boolean Private
Flag to indicate if there is more than a single data set.
Default:
Used in: Heatmap
isOncoprint boolean
Flag to draw an oncoprint heatmap
Default: false
Used in: Heatmap
isOncoprint boolean
Flag to draw an oncoprint heatmap
Default: false
Used in: Heatmap
Threshold to qualify amplifications in oncoprints
Default: 3
Used in: Heatmap
Threshold to qualify amplifications in oncoprints
Default: 3
Used in: Heatmap
oncoprintCode boolean
Flag to print code for mutations in oncoprint
Default: false
Used in: Heatmap
oncoprintCode boolean
Flag to print code for mutations in oncoprint
Default: false
Used in: Heatmap
Threshold to qualify deletions in oncoprints
Default: 1
Used in: Heatmap
Threshold to qualify deletions in oncoprints
Default: 1
Used in: Heatmap
Flag to show the heatmap color indicator
Default: true
Used in: Heatmap
Flag to show the heatmap color indicator
Default: true
Used in: Heatmap
smpIndicesStart integer Private
Number that indicates starting point for samples in heatmaps when the canvas is zoom in.
Default:
Used in: Heatmap
smpIndicesStart integer Private
Number that indicates starting point for samples in heatmaps when the canvas is zoom in.
Default:
Used in: Heatmap
varIndicesStart integer Private
Number that indicates starting point for variables in heatmaps when the canvas is zoom in.
Default:
Used in: Heatmap
varIndicesStart integer Private
Number that indicates starting point for variables in heatmaps when the canvas is zoom in.
Default:
Used in: Heatmap
Position for variable labels
Default: bottom
Options: bottom, top
Used in: Heatmap
Position for variable labels
Default: bottom
Options: bottom, top
Used in: Heatmap