Genome Graphs for Genetic Analysis
Genome graphs represent a revolutionary advancement in genomics, moving beyond linear reference genomes to encompass the vast diversity of genomic variation within populations. These complex data structures integrate multiple genome sequences, enabling more accurate and comprehensive analysis of genetic information. Applications range from improving disease diagnostics to facilitating more effective personalized medicine, as genome graphs provide a richer context for understanding individual genetic differences and their implications for health. This technology offers significant potential for advancing biological and medical research.
<html>
<head>
<!-- Include the CanvasXpress library in your HTML file -->
<link rel="stylesheet" href="https://www.canvasxpress.org/dist/canvasXpress.css" type="text/css"/>
<script src="https://www.canvasxpress.org/dist/canvasXpress.min.js"></script>
</head>
<body>
<!-- Create a canvas element for the chart with the desired dimensions -->
<div>
<canvas id="canvasId" width="600" height="600"></canvas>
</div>
<!-- Create a script to initialize the chart -->
<script>
// Create the data for the graph
var data = {
"tracks" : [{"data" : [{"dir" : "right","fill" : "rgb(51,255,255)","id" : "Reference Sequence","offset" : 1,"outline" : "rgb(0,0,0)","sequence" : "TACGTACGTACGTACGTACGTACGTACGT","translate" : [-3,-2,-1,1,2,3]
},
{
"coordinate" : 50,
"dir" : "right",
"fill" : "rgb(255,255,51)",
"gaps" : [
[4,2],
[8,1]
],
"id" : "R1-0000-1234",
"offset" : 1,
"outline" : "rgb(0,0,0)",
"sequence" : "TACGCGTAGTACGT",
"trace" : {
"A" : [15,27,47,72,93,101,93,72,47,27,15,54,120,224,350,459,502,459,350,224,120,54,3,4,6,12,24,43,67,86,94,86,67,43,24,12,6,4,3,13,26,45,69,89,97,89,69,45,26,13,13,26,46,70,92,100,92,70,46,26,13,5,12,26,48,75,99,108,99,75,48,26,12,5,2,4,10,22,41,64,83,91,83,64,41,22,10,4,2,22,55,122,226,353,462,505,462,353,226,122,55,22,4,11,24,45,70,92,100,92,70,45,24,11,4,2,3,6,13,28,50,78,102,111,102,78,50,28,13,6,3,2,6,11,26,62,135,249,388,506,553,506,388,249,135,62,26,11,6,6,8,14,26,45,68,87,95,87,68,45,26,14,8,6,11,23,43,67,88,96,88,67,43,23,11,5,6,8,15,28,48,73,94,102,94,73,48,28,15,8,6,5],
"C" : [10,16,26,39,50,54,50,39,26,16,10,7,14,26,40,51,56,51,40,26,14,7,4,8,20,50,109,203,317,414,453,414,317,203,109,50,20,8,4,9,16,26,39,51,55,51,39,26,16,9,56,123,229,357,467,511,467,357,229,123,56,2,6,12,22,35,45,49,45,35,22,12,6,2,1,3,6,13,25,39,50,55,50,39,25,13,6,3,1,5,8,15,26,39,50,55,50,39,26,15,8,5,2,5,11,21,32,42,46,42,32,21,11,5,2,2,2,3,6,12,22,33,43,47,43,33,22,12,6,3,2,2,5,5,6,9,16,25,37,47,51,47,37,25,16,9,6,5,5,10,24,56,121,223,347,453,495,453,347,223,121,56,24,10,6,13,24,37,48,52,48,37,24,13,6,5,5,6,9,15,25,36,46,50,46,36,25,15,9,6,5,5],
"G" : [7,10,15,20,25,27,25,20,15,10,7,4,7,13,19,25,27,25,19,13,7,4,3,3,3,5,8,14,20,25,27,25,20,14,8,5,3,3,3,56,122,226,353,461,504,461,353,226,122,56,5,8,13,19,24,26,24,19,13,8,5,22,58,130,245,383,502,549,502,383,245,130,58,22,1,1,3,7,12,18,24,26,24,18,12,7,3,1,1,3,5,8,13,19,24,26,24,19,13,8,5,3,19,51,114,213,334,437,478,437,334,213,114,51,19,2,2,3,4,8,14,21,26,29,26,21,14,8,4,3,2,2,5,5,5,7,10,15,20,25,27,25,20,15,10,7,5,5,5,5,5,7,10,15,20,25,27,25,20,15,10,7,5,5,53,119,223,349,457,500,457,349,223,119,53,5,5,5,7,10,15,21,26,28,26,21,15,10,7,5,5,5],
"T" : [62,135,249,388,507,554,507,388,249,135,62,2,4,6,8,10,11,10,8,6,4,2,3,3,3,4,5,7,9,12,12,12,9,7,5,4,3,3,3,5,6,8,11,13,14,13,11,8,6,5,4,5,7,10,12,13,12,10,7,5,4,1,2,3,5,8,10,11,10,8,5,3,2,1,7,22,58,130,244,383,501,548,501,383,244,130,58,22,7,3,4,5,7,10,12,13,12,10,7,5,4,3,1,2,3,5,8,10,11,10,8,5,3,2,1,3,8,21,54,119,222,347,454,497,454,347,222,119,54,21,8,3,5,5,5,6,7,9,12,14,15,14,12,9,7,6,5,5,5,5,5,6,7,9,12,14,15,14,12,9,7,6,5,5,2,3,5,7,9,10,9,7,5,3,2,6,11,25,61,131,242,377,492,538,492,377,242,131,61,25,11,6],
"max" : 507,
"peak" : [5,16,30,44,55,67,81,95,108,123,140,156,169,183]
}
},
{
"coordinate" : 80,
"dir" : "right",
"fill" : "rgb(255,255,102)",
"gaps" : [[3,1],
[10,1]
],
"id" : "R1-0000-2345",
"offset" : 6,
"outline" : "rgb(0,0,0)",
"sequence" : "ACGACGTACGACG",
"trace" : {
"A" : [49,110,206,323,424,463,424,323,206,110,49,3,5,12,24,45,69,90,98,90,69,45,24,12,5,3,5,7,14,28,49,75,97,105,97,75,49,28,14,7,5,5,10,25,61,132,245,382,499,545,499,382,245,132,61,25,10,5,7,13,27,48,74,96,105,96,74,48,27,13,7,4,6,13,25,46,70,91,100,91,70,46,25,13,6,4,4,7,14,27,49,76,99,108,99,76,49,27,14,7,4,3,8,22,57,125,234,366,479,524,479,366,234,125,57,22,8,3,5,8,15,30,52,80,104,113,104,80,52,30,15,8,5,7,13,25,44,66,86,94,86,66,44,25,13,7,23,58,127,236,368,482,527,482,368,236,127,58,23,3,4,6,13,26,47,73,95,104,95,73,47,26,13,6,4,3,5,6,9,16,30,52,79,102,111,102,79,52,30,16,9,6,5],
"C" : [5,12,21,33,43,47,43,33,21,12,5,7,21,53,117,218,341,447,488,447,341,218,117,53,21,7,4,5,9,15,26,38,49,53,49,38,26,15,9,5,4,4,4,6,9,16,27,40,51,56,51,40,27,16,9,6,4,4,20,50,109,203,317,415,453,415,317,203,109,50,20,3,4,8,14,25,37,48,52,48,37,25,14,8,4,3,3,4,8,14,24,36,46,50,46,36,24,14,8,4,3,2,2,3,6,13,22,34,44,48,44,34,22,13,6,3,2,2,9,23,55,118,219,342,447,489,447,342,219,118,55,23,9,5,9,16,26,39,50,54,50,39,26,16,9,5,4,8,14,25,37,48,52,48,37,25,14,8,4,4,9,22,55,120,224,349,457,500,457,349,224,120,55,22,9,4,5,5,7,10,17,27,40,51,56,51,40,27,17,10,7,5,5],
"G" : [3,6,11,17,22,24,22,17,11,6,3,2,2,4,7,12,17,22,24,22,17,12,7,4,2,2,10,24,59,129,239,373,487,533,487,373,239,129,59,24,10,4,4,4,6,9,14,20,25,27,25,20,14,9,6,4,4,4,3,5,8,13,19,24,26,24,19,13,8,5,3,9,23,59,129,239,374,489,534,489,374,239,129,59,23,9,3,3,5,8,13,18,23,25,23,18,13,8,5,3,3,2,2,2,4,7,12,17,22,24,22,17,12,7,4,2,2,2,4,4,6,9,14,19,24,26,24,19,14,9,6,4,4,22,52,113,209,325,425,465,425,325,209,113,52,22,3,5,8,13,19,24,26,24,19,13,8,5,3,3,3,3,5,8,14,20,26,28,26,20,14,8,5,3,3,3,6,11,26,62,133,246,383,501,547,501,383,246,133,62,26,11,6],
"T" : [2,3,5,7,10,10,10,7,5,3,2,2,2,2,4,6,8,10,11,10,8,6,4,2,2,2,4,4,4,6,8,10,12,13,12,10,8,6,4,4,4,4,4,4,5,6,8,11,13,14,13,11,8,6,5,4,4,4,3,4,5,7,10,12,13,12,10,7,5,4,3,3,3,3,5,7,9,11,12,11,9,7,5,3,3,3,8,21,52,115,213,333,436,476,436,333,213,115,52,21,8,2,2,2,3,4,6,8,10,11,10,8,6,4,3,2,2,2,4,4,4,6,8,10,12,13,12,10,8,6,4,4,4,4,4,6,8,10,12,13,12,10,8,6,4,4,3,4,5,7,9,11,12,11,9,7,5,4,3,3,3,3,4,5,7,10,12,13,12,10,7,5,4,3,3,3,5,5,5,6,7,9,11,14,14,14,11,9,7,6,5,5,5],
"max" : 501,
"peak" : [5,18,33,49,64,78,93,109,125,139,152,167,184]
}
},
{
"coordinate" : 150,
"dir" : "left",
"fill" : "rgb(255,51,255)",
"gaps" : [[7,2]
],
"id" : "R1-0000-3456",
"offset" : 12,
"offsetLeft" : "23",
"outline" : "rgb(0,0,0)",
"sequence" : "GTACGTATAC",
"trace" : {
"A" : [4,4,5,6,8,11,13,14,13,11,8,6,5,4,4,2,2,3,4,6,8,10,11,10,8,6,4,3,2,2,8,20,50,110,205,320,418,457,418,320,205,110,50,20,8,5,5,5,7,9,11,13,14,13,11,9,7,5,5,5,8,23,59,130,243,380,498,545,498,380,243,130,59,23,8,1,1,1,2,3,5,8,10,11,10,8,5,3,2,1,1,1,4,5,7,10,12,13,12,10,7,5,4,5,5,6,7,9,12,14,15,14,12,9,7,6,5,5,10,23,57,124,230,358,468,512,468,358,230,124,57,23,10,1,1,3,5,7,9,10,9,7,5,3,1,1],
"C" : [4,4,6,10,15,21,27,29,27,21,15,10,6,4,4,2,3,4,8,14,21,26,29,26,21,14,8,4,3,2,3,3,5,8,13,19,24,26,24,19,13,8,5,3,3,5,6,7,11,17,24,30,32,30,24,17,11,7,6,5,2,2,4,7,13,19,24,26,24,19,13,7,4,2,2,2,7,21,56,126,236,370,485,531,485,370,236,126,56,21,7,2,5,8,13,19,24,26,24,19,13,8,5,5,6,7,11,16,23,29,31,29,23,16,11,7,6,5,4,4,6,9,14,21,26,28,26,21,14,9,6,4,4,21,54,122,228,357,467,511,467,357,228,122,54,21],
"G" : [10,24,57,125,231,360,470,514,470,360,231,125,57,24,10,2,3,7,13,23,35,46,50,46,35,23,13,7,3,2,3,5,8,15,26,39,51,55,51,39,26,15,8,5,3,5,6,9,15,25,36,46,50,46,36,25,15,9,6,5,2,3,6,13,22,34,44,48,44,34,22,13,6,3,2,1,1,2,6,12,22,34,44,48,44,34,22,12,6,2,1,1,59,130,242,377,494,540,494,377,242,130,59,5,7,10,17,28,41,53,57,53,41,28,17,10,7,5,4,5,8,14,24,35,45,49,45,35,24,14,8,5,4,2,6,13,23,36,47,51,47,36,23,13,6,2],
"T" : [5,8,15,28,50,76,99,108,99,76,50,28,15,8,5,7,19,50,110,206,322,421,460,421,322,206,110,50,19,7,4,7,13,27,49,75,98,107,98,75,49,27,13,7,4,11,24,58,124,228,355,464,507,464,355,228,124,58,24,11,3,6,13,26,48,75,98,107,98,75,48,26,13,6,3,1,2,4,11,24,44,69,90,99,90,69,44,24,11,4,2,1,13,25,45,69,89,97,89,69,45,25,13,11,24,58,124,228,356,465,508,465,356,228,124,58,24,11,5,8,15,29,51,79,102,111,102,79,51,29,15,8,5,4,10,22,41,64,84,92,84,64,41,22,10,4],
"max" : 511,
"peak" : [8,23,38,53,68,84,98,111,126,140],
"reversed" : true
}
},
{
"coordinate" : 20,
"dir" : "right",
"fill" : "rgb(255,102,255)",
"gaps" : [[5,1]
],
"id" : "R1-0000-4567",
"offset" : 15,
"outline" : "rgb(0,0,0)",
"sequence" : "CGTACTACGTA",
"trace" : {
"A" : [9,16,29,51,78,100,110,100,78,51,29,16,9,15,28,50,77,100,109,100,77,50,28,15,4,5,7,13,25,44,67,86,94,86,67,44,25,13,7,5,4,4,8,21,53,115,214,335,438,479,438,335,214,115,53,21,8,4,2,3,5,11,23,42,65,85,93,85,65,42,23,11,5,3,2,8,15,29,52,80,103,113,103,80,52,29,15,8,4,9,23,57,126,233,365,477,522,477,365,233,126,57,23,9,4,2,4,10,23,42,66,87,95,87,66,42,23,10,4,2,3,5,12,25,46,71,93,101,93,71,46,25,12,5,3,4,5,8,14,28,50,76,99,108,99,76,50,28,14,8,5,4,19,49,108,202,316,413,452,413,316,202,108,49,19],
"C" : [24,56,121,223,348,454,496,454,348,223,121,56,24,8,14,24,36,46,50,46,36,24,14,8,4,4,5,8,15,24,36,46,50,46,36,24,15,8,5,4,4,3,3,4,8,14,25,38,48,53,48,38,25,14,8,4,3,3,3,8,21,54,119,222,348,455,498,455,348,222,119,54,21,8,3,5,9,15,25,38,48,52,48,38,25,15,9,5,3,3,5,8,15,26,39,51,55,51,39,26,15,8,5,3,3,6,18,48,107,201,315,412,451,412,315,201,107,48,18,6,2,3,6,12,22,33,43,47,43,33,22,12,6,3,2,4,4,6,9,16,28,42,54,58,54,42,28,16,9,6,4,4,3,7,13,24,37,47,52,47,37,24,13,7,3],
"G" : [6,7,11,16,23,29,31,29,23,16,11,7,6,56,121,223,348,455,498,455,348,223,121,56,4,4,5,6,10,16,23,28,31,28,23,16,10,6,5,4,4,3,3,4,5,9,14,21,26,29,26,21,14,9,5,4,3,3,2,2,2,4,7,12,18,24,26,24,18,12,7,4,2,2,2,4,6,9,14,19,24,26,24,19,14,9,6,4,3,3,3,5,8,13,19,24,26,24,19,13,8,5,3,3,3,1,2,3,7,12,19,24,27,24,19,12,7,3,2,1,7,20,51,113,211,330,432,473,432,330,211,113,51,20,7,4,4,4,6,9,15,21,26,29,26,21,15,9,6,4,4,4,3,4,8,13,20,26,28,26,20,13,8,4,3],
"T" : [5,6,7,9,11,13,14,13,11,9,7,6,5,4,6,8,10,12,13,12,10,8,6,4,5,10,24,60,130,241,376,492,538,492,376,241,130,60,24,10,5,3,3,3,3,5,7,9,11,12,11,9,7,5,3,3,3,3,2,2,2,2,4,6,8,10,11,10,8,6,4,2,2,2,2,22,53,114,211,328,429,469,429,328,211,114,53,22,3,3,3,3,5,7,9,11,12,11,9,7,5,3,3,3,3,1,1,2,3,5,7,9,10,9,7,5,3,2,1,1,2,2,2,4,6,8,10,11,10,8,6,4,2,2,2,5,10,24,58,127,235,366,479,524,479,366,235,127,58,24,10,5,2,3,4,6,8,10,11,10,8,6,4,3,2],
"max" : 492,
"peak" : [6,18,32,49,66,81,96,112,127,143,158]
}
},
{
"coordinate" : 120,
"dir" : "right",
"fill" : "rgb(51,255,255)",
"gaps" : [[7,1]
],
"id" : "R1-0000-5678",
"offset" : 18,
"outline" : "rgb(0,0,0)",
"sequence" : "ACGTACGACGT",
"trace" : {
"A" : [10,25,60,131,244,380,497,544,497,380,244,131,60,25,10,5,6,8,15,28,48,73,95,103,95,73,48,28,15,8,6,5,4,6,13,26,47,72,94,102,94,72,47,26,13,6,4,6,8,15,28,49,74,95,104,95,74,49,28,15,8,6,2,7,22,58,129,243,380,498,545,498,380,243,129,58,22,7,2,11,23,43,66,86,94,86,66,43,23,11,5,8,15,28,50,77,100,109,100,77,50,28,15,8,5,6,11,24,58,125,232,361,471,515,471,361,232,125,58,24,11,6,12,24,43,66,85,93,85,66,43,24,12,14,28,50,76,99,108,99,76,50,28,14,5,7,14,27,47,72,93,101,93,72,47,27,14,7,5],
"C" : [4,5,8,15,24,36,46,50,46,36,24,15,8,5,4,6,11,26,62,135,249,388,506,554,506,388,249,135,62,26,11,6,3,5,8,15,25,38,49,54,49,38,25,15,8,5,3,5,6,9,15,25,36,46,50,46,36,25,15,9,6,5,1,1,3,6,13,24,37,49,53,49,37,24,13,6,3,1,1,53,117,219,342,447,489,447,342,219,117,53,4,5,8,15,25,36,47,51,47,36,25,15,8,5,4,5,5,7,10,17,28,41,53,57,53,41,28,17,10,7,5,5,57,124,231,360,471,516,471,360,231,124,57,9,16,27,40,51,55,51,40,27,16,9,4,6,9,16,27,41,52,57,52,41,27,16,9,6,4],
"G" : [4,5,6,10,16,22,28,31,28,22,16,10,6,5,4,5,5,5,7,10,15,21,26,28,26,21,15,10,7,5,5,5,8,21,53,116,216,337,440,482,440,337,216,116,53,21,8,5,6,7,11,17,23,29,32,29,23,17,11,7,6,5,1,1,1,3,6,11,17,22,24,22,17,11,6,3,1,1,1,4,8,13,20,25,27,25,20,13,8,4,9,21,52,111,206,321,420,459,420,321,206,111,52,21,9,5,5,5,7,10,16,22,27,30,27,22,16,10,7,5,5,5,5,8,14,20,25,27,25,20,14,8,5,57,124,230,358,468,512,468,358,230,124,57,4,4,6,9,14,20,25,28,25,20,14,9,6,4,4],
"T" : [4,4,5,6,8,11,14,14,14,11,8,6,5,4,4,5,5,5,6,7,9,12,14,15,14,12,9,7,6,5,5,5,3,3,4,5,7,10,12,13,12,10,7,5,4,3,3,11,24,57,122,224,349,456,498,456,349,224,122,57,24,11,1,1,1,2,3,5,8,10,11,10,8,5,3,2,1,1,1,3,4,6,8,11,11,11,8,6,4,3,4,4,5,6,8,11,13,14,13,11,8,6,5,4,4,5,5,5,6,7,9,12,14,15,14,12,9,7,6,5,5,5,4,5,7,10,12,13,12,10,7,5,4,4,6,8,10,12,13,12,10,8,6,4,10,25,60,131,242,378,494,540,494,378,242,131,60,25,10],
"max" : 512,
"peak" : [7,23,39,54,70,84,97,113,127,138,151]
}
}
],
"highlight" : [{"color" : "rgb(120,120,180)","offset" : 8,"width" : 1},{"color" : "rgb(180,20,180)","offset" : 22,"width" : 1}],
"subtype" : "DNA",
"type" : "sequence"
}
]
}
// Create the configuration for the graph
var config = {
"background" : "rgb(245,245,245)",
"graphType" : "Genome",
"setMax" : 30,
"setMin" : 0
}
// Event used to create graph (optional)
var events = false
// Call the CanvasXpress function to create the graph
var cX = new CanvasXpress("canvasId", data, config, events);
</script>
</body>
</html>
library(canvasXpress)
library(jsonlite)
genome <- read_json("https://www.canvasxpress.org/data/r/cX-genomeintermediate.json")
canvasXpress(
data=genome,
background="rgb(245,245,245)",
graphType="Genome",
setMax=30,
setMin=0
)
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import show_in_browser
if __name__ == "__main__":
# Define the chart with its data and configuration
chart: CanvasXpress = CanvasXpress(
render_to = "genome2",
data = {
"tracks": [
{
"data": [
{
"dir": "right",
"fill": "rgb(51,255,255)",
"id": "Reference Sequence",
"offset": 1,
"outline": "rgb(0,0,0)",
"sequence": "TACGTACGTACGTACGTACGTACGTACGT",
"translate": [-3, -2, -1, 1, 2, 3]
},
{
"coordinate": 50,
"dir": "right",
"fill": "rgb(255,255,51)",
"gaps": [
[4, 2],
[8, 1]
],
"id": "R1-0000-1234",
"offset": 1,
"outline": "rgb(0,0,0)",
"sequence": "TACGCGTAGTACGT",
"trace": {
"A": [15, 27, 47, 72, 93, 101, 93, 72, 47, 27, 15, 54, 120, 224, 350, 459, 502, 459, 350, 224, 120, 54, 3, 4, 6, 12, 24, 43, 67, 86, 94, 86, 67, 43, 24, 12, 6, 4, 3, 13, 26, 45, 69, 89, 97, 89, 69, 45, 26, 13, 13, 26, 46, 70, 92, 100, 92, 70, 46, 26, 13, 5, 12, 26, 48, 75, 99, 108, 99, 75, 48, 26, 12, 5, 2, 4, 10, 22, 41, 64, 83, 91, 83, 64, 41, 22, 10, 4, 2, 22, 55, 122, 226, 353, 462, 505, 462, 353, 226, 122, 55, 22, 4, 11, 24, 45, 70, 92, 100, 92, 70, 45, 24, 11, 4, 2, 3, 6, 13, 28, 50, 78, 102, 111, 102, 78, 50, 28, 13, 6, 3, 2, 6, 11, 26, 62, 135, 249, 388, 506, 553, 506, 388, 249, 135, 62, 26, 11, 6, 6, 8, 14, 26, 45, 68, 87, 95, 87, 68, 45, 26, 14, 8, 6, 11, 23, 43, 67, 88, 96, 88, 67, 43, 23, 11, 5, 6, 8, 15, 28, 48, 73, 94, 102, 94, 73, 48, 28, 15, 8, 6, 5],
"C": [10, 16, 26, 39, 50, 54, 50, 39, 26, 16, 10, 7, 14, 26, 40, 51, 56, 51, 40, 26, 14, 7, 4, 8, 20, 50, 109, 203, 317, 414, 453, 414, 317, 203, 109, 50, 20, 8, 4, 9, 16, 26, 39, 51, 55, 51, 39, 26, 16, 9, 56, 123, 229, 357, 467, 511, 467, 357, 229, 123, 56, 2, 6, 12, 22, 35, 45, 49, 45, 35, 22, 12, 6, 2, 1, 3, 6, 13, 25, 39, 50, 55, 50, 39, 25, 13, 6, 3, 1, 5, 8, 15, 26, 39, 50, 55, 50, 39, 26, 15, 8, 5, 2, 5, 11, 21, 32, 42, 46, 42, 32, 21, 11, 5, 2, 2, 2, 3, 6, 12, 22, 33, 43, 47, 43, 33, 22, 12, 6, 3, 2, 2, 5, 5, 6, 9, 16, 25, 37, 47, 51, 47, 37, 25, 16, 9, 6, 5, 5, 10, 24, 56, 121, 223, 347, 453, 495, 453, 347, 223, 121, 56, 24, 10, 6, 13, 24, 37, 48, 52, 48, 37, 24, 13, 6, 5, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 5],
"G": [7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 4, 7, 13, 19, 25, 27, 25, 19, 13, 7, 4, 3, 3, 3, 5, 8, 14, 20, 25, 27, 25, 20, 14, 8, 5, 3, 3, 3, 56, 122, 226, 353, 461, 504, 461, 353, 226, 122, 56, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 22, 58, 130, 245, 383, 502, 549, 502, 383, 245, 130, 58, 22, 1, 1, 3, 7, 12, 18, 24, 26, 24, 18, 12, 7, 3, 1, 1, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 19, 51, 114, 213, 334, 437, 478, 437, 334, 213, 114, 51, 19, 2, 2, 3, 4, 8, 14, 21, 26, 29, 26, 21, 14, 8, 4, 3, 2, 2, 5, 5, 5, 7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 5, 5, 5, 5, 5, 7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 5, 5, 53, 119, 223, 349, 457, 500, 457, 349, 223, 119, 53, 5, 5, 5, 7, 10, 15, 21, 26, 28, 26, 21, 15, 10, 7, 5, 5, 5],
"T": [62, 135, 249, 388, 507, 554, 507, 388, 249, 135, 62, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 3, 3, 3, 4, 5, 7, 9, 12, 12, 12, 9, 7, 5, 4, 3, 3, 3, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 7, 22, 58, 130, 244, 383, 501, 548, 501, 383, 244, 130, 58, 22, 7, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 3, 8, 21, 54, 119, 222, 347, 454, 497, 454, 347, 222, 119, 54, 21, 8, 3, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 2, 3, 5, 7, 9, 10, 9, 7, 5, 3, 2, 6, 11, 25, 61, 131, 242, 377, 492, 538, 492, 377, 242, 131, 61, 25, 11, 6],
"max": 507,
"peak": [5, 16, 30, 44, 55, 67, 81, 95, 108, 123, 140, 156, 169, 183]
}
},
{
"coordinate": 80,
"dir": "right",
"fill": "rgb(255,255,102)",
"gaps": [
[3, 1],
[10, 1]
],
"id": "R1-0000-2345",
"offset": 6,
"outline": "rgb(0,0,0)",
"sequence": "ACGACGTACGACG",
"trace": {
"A": [49, 110, 206, 323, 424, 463, 424, 323, 206, 110, 49, 3, 5, 12, 24, 45, 69, 90, 98, 90, 69, 45, 24, 12, 5, 3, 5, 7, 14, 28, 49, 75, 97, 105, 97, 75, 49, 28, 14, 7, 5, 5, 10, 25, 61, 132, 245, 382, 499, 545, 499, 382, 245, 132, 61, 25, 10, 5, 7, 13, 27, 48, 74, 96, 105, 96, 74, 48, 27, 13, 7, 4, 6, 13, 25, 46, 70, 91, 100, 91, 70, 46, 25, 13, 6, 4, 4, 7, 14, 27, 49, 76, 99, 108, 99, 76, 49, 27, 14, 7, 4, 3, 8, 22, 57, 125, 234, 366, 479, 524, 479, 366, 234, 125, 57, 22, 8, 3, 5, 8, 15, 30, 52, 80, 104, 113, 104, 80, 52, 30, 15, 8, 5, 7, 13, 25, 44, 66, 86, 94, 86, 66, 44, 25, 13, 7, 23, 58, 127, 236, 368, 482, 527, 482, 368, 236, 127, 58, 23, 3, 4, 6, 13, 26, 47, 73, 95, 104, 95, 73, 47, 26, 13, 6, 4, 3, 5, 6, 9, 16, 30, 52, 79, 102, 111, 102, 79, 52, 30, 16, 9, 6, 5],
"C": [5, 12, 21, 33, 43, 47, 43, 33, 21, 12, 5, 7, 21, 53, 117, 218, 341, 447, 488, 447, 341, 218, 117, 53, 21, 7, 4, 5, 9, 15, 26, 38, 49, 53, 49, 38, 26, 15, 9, 5, 4, 4, 4, 6, 9, 16, 27, 40, 51, 56, 51, 40, 27, 16, 9, 6, 4, 4, 20, 50, 109, 203, 317, 415, 453, 415, 317, 203, 109, 50, 20, 3, 4, 8, 14, 25, 37, 48, 52, 48, 37, 25, 14, 8, 4, 3, 3, 4, 8, 14, 24, 36, 46, 50, 46, 36, 24, 14, 8, 4, 3, 2, 2, 3, 6, 13, 22, 34, 44, 48, 44, 34, 22, 13, 6, 3, 2, 2, 9, 23, 55, 118, 219, 342, 447, 489, 447, 342, 219, 118, 55, 23, 9, 5, 9, 16, 26, 39, 50, 54, 50, 39, 26, 16, 9, 5, 4, 8, 14, 25, 37, 48, 52, 48, 37, 25, 14, 8, 4, 4, 9, 22, 55, 120, 224, 349, 457, 500, 457, 349, 224, 120, 55, 22, 9, 4, 5, 5, 7, 10, 17, 27, 40, 51, 56, 51, 40, 27, 17, 10, 7, 5, 5],
"G": [3, 6, 11, 17, 22, 24, 22, 17, 11, 6, 3, 2, 2, 4, 7, 12, 17, 22, 24, 22, 17, 12, 7, 4, 2, 2, 10, 24, 59, 129, 239, 373, 487, 533, 487, 373, 239, 129, 59, 24, 10, 4, 4, 4, 6, 9, 14, 20, 25, 27, 25, 20, 14, 9, 6, 4, 4, 4, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 9, 23, 59, 129, 239, 374, 489, 534, 489, 374, 239, 129, 59, 23, 9, 3, 3, 5, 8, 13, 18, 23, 25, 23, 18, 13, 8, 5, 3, 3, 2, 2, 2, 4, 7, 12, 17, 22, 24, 22, 17, 12, 7, 4, 2, 2, 2, 4, 4, 6, 9, 14, 19, 24, 26, 24, 19, 14, 9, 6, 4, 4, 22, 52, 113, 209, 325, 425, 465, 425, 325, 209, 113, 52, 22, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 3, 3, 5, 8, 14, 20, 26, 28, 26, 20, 14, 8, 5, 3, 3, 3, 6, 11, 26, 62, 133, 246, 383, 501, 547, 501, 383, 246, 133, 62, 26, 11, 6],
"T": [2, 3, 5, 7, 10, 10, 10, 7, 5, 3, 2, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 4, 4, 4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 4, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 8, 21, 52, 115, 213, 333, 436, 476, 436, 333, 213, 115, 52, 21, 8, 2, 2, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2, 2, 2, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 3, 4, 5, 7, 9, 11, 12, 11, 9, 7, 5, 4, 3, 3, 3, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 3, 5, 5, 5, 6, 7, 9, 11, 14, 14, 14, 11, 9, 7, 6, 5, 5, 5],
"max": 501,
"peak": [5, 18, 33, 49, 64, 78, 93, 109, 125, 139, 152, 167, 184]
}
},
{
"coordinate": 150,
"dir": "left",
"fill": "rgb(255,51,255)",
"gaps": [
[7, 2]
],
"id": "R1-0000-3456",
"offset": 12,
"offsetLeft": "23",
"outline": "rgb(0,0,0)",
"sequence": "GTACGTATAC",
"trace": {
"A": [4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 2, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2, 2, 8, 20, 50, 110, 205, 320, 418, 457, 418, 320, 205, 110, 50, 20, 8, 5, 5, 5, 7, 9, 11, 13, 14, 13, 11, 9, 7, 5, 5, 5, 8, 23, 59, 130, 243, 380, 498, 545, 498, 380, 243, 130, 59, 23, 8, 1, 1, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 1, 1, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 10, 23, 57, 124, 230, 358, 468, 512, 468, 358, 230, 124, 57, 23, 10, 1, 1, 3, 5, 7, 9, 10, 9, 7, 5, 3, 1, 1],
"C": [4, 4, 6, 10, 15, 21, 27, 29, 27, 21, 15, 10, 6, 4, 4, 2, 3, 4, 8, 14, 21, 26, 29, 26, 21, 14, 8, 4, 3, 2, 3, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 5, 6, 7, 11, 17, 24, 30, 32, 30, 24, 17, 11, 7, 6, 5, 2, 2, 4, 7, 13, 19, 24, 26, 24, 19, 13, 7, 4, 2, 2, 2, 7, 21, 56, 126, 236, 370, 485, 531, 485, 370, 236, 126, 56, 21, 7, 2, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 5, 6, 7, 11, 16, 23, 29, 31, 29, 23, 16, 11, 7, 6, 5, 4, 4, 6, 9, 14, 21, 26, 28, 26, 21, 14, 9, 6, 4, 4, 21, 54, 122, 228, 357, 467, 511, 467, 357, 228, 122, 54, 21],
"G": [10, 24, 57, 125, 231, 360, 470, 514, 470, 360, 231, 125, 57, 24, 10, 2, 3, 7, 13, 23, 35, 46, 50, 46, 35, 23, 13, 7, 3, 2, 3, 5, 8, 15, 26, 39, 51, 55, 51, 39, 26, 15, 8, 5, 3, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 2, 3, 6, 13, 22, 34, 44, 48, 44, 34, 22, 13, 6, 3, 2, 1, 1, 2, 6, 12, 22, 34, 44, 48, 44, 34, 22, 12, 6, 2, 1, 1, 59, 130, 242, 377, 494, 540, 494, 377, 242, 130, 59, 5, 7, 10, 17, 28, 41, 53, 57, 53, 41, 28, 17, 10, 7, 5, 4, 5, 8, 14, 24, 35, 45, 49, 45, 35, 24, 14, 8, 5, 4, 2, 6, 13, 23, 36, 47, 51, 47, 36, 23, 13, 6, 2],
"T": [5, 8, 15, 28, 50, 76, 99, 108, 99, 76, 50, 28, 15, 8, 5, 7, 19, 50, 110, 206, 322, 421, 460, 421, 322, 206, 110, 50, 19, 7, 4, 7, 13, 27, 49, 75, 98, 107, 98, 75, 49, 27, 13, 7, 4, 11, 24, 58, 124, 228, 355, 464, 507, 464, 355, 228, 124, 58, 24, 11, 3, 6, 13, 26, 48, 75, 98, 107, 98, 75, 48, 26, 13, 6, 3, 1, 2, 4, 11, 24, 44, 69, 90, 99, 90, 69, 44, 24, 11, 4, 2, 1, 13, 25, 45, 69, 89, 97, 89, 69, 45, 25, 13, 11, 24, 58, 124, 228, 356, 465, 508, 465, 356, 228, 124, 58, 24, 11, 5, 8, 15, 29, 51, 79, 102, 111, 102, 79, 51, 29, 15, 8, 5, 4, 10, 22, 41, 64, 84, 92, 84, 64, 41, 22, 10, 4],
"max": 511,
"peak": [8, 23, 38, 53, 68, 84, 98, 111, 126, 140],
"reversed": True
}
},
{
"coordinate": 20,
"dir": "right",
"fill": "rgb(255,102,255)",
"gaps": [
[5, 1]
],
"id": "R1-0000-4567",
"offset": 15,
"outline": "rgb(0,0,0)",
"sequence": "CGTACTACGTA",
"trace": {
"A": [9, 16, 29, 51, 78, 100, 110, 100, 78, 51, 29, 16, 9, 15, 28, 50, 77, 100, 109, 100, 77, 50, 28, 15, 4, 5, 7, 13, 25, 44, 67, 86, 94, 86, 67, 44, 25, 13, 7, 5, 4, 4, 8, 21, 53, 115, 214, 335, 438, 479, 438, 335, 214, 115, 53, 21, 8, 4, 2, 3, 5, 11, 23, 42, 65, 85, 93, 85, 65, 42, 23, 11, 5, 3, 2, 8, 15, 29, 52, 80, 103, 113, 103, 80, 52, 29, 15, 8, 4, 9, 23, 57, 126, 233, 365, 477, 522, 477, 365, 233, 126, 57, 23, 9, 4, 2, 4, 10, 23, 42, 66, 87, 95, 87, 66, 42, 23, 10, 4, 2, 3, 5, 12, 25, 46, 71, 93, 101, 93, 71, 46, 25, 12, 5, 3, 4, 5, 8, 14, 28, 50, 76, 99, 108, 99, 76, 50, 28, 14, 8, 5, 4, 19, 49, 108, 202, 316, 413, 452, 413, 316, 202, 108, 49, 19],
"C": [24, 56, 121, 223, 348, 454, 496, 454, 348, 223, 121, 56, 24, 8, 14, 24, 36, 46, 50, 46, 36, 24, 14, 8, 4, 4, 5, 8, 15, 24, 36, 46, 50, 46, 36, 24, 15, 8, 5, 4, 4, 3, 3, 4, 8, 14, 25, 38, 48, 53, 48, 38, 25, 14, 8, 4, 3, 3, 3, 8, 21, 54, 119, 222, 348, 455, 498, 455, 348, 222, 119, 54, 21, 8, 3, 5, 9, 15, 25, 38, 48, 52, 48, 38, 25, 15, 9, 5, 3, 3, 5, 8, 15, 26, 39, 51, 55, 51, 39, 26, 15, 8, 5, 3, 3, 6, 18, 48, 107, 201, 315, 412, 451, 412, 315, 201, 107, 48, 18, 6, 2, 3, 6, 12, 22, 33, 43, 47, 43, 33, 22, 12, 6, 3, 2, 4, 4, 6, 9, 16, 28, 42, 54, 58, 54, 42, 28, 16, 9, 6, 4, 4, 3, 7, 13, 24, 37, 47, 52, 47, 37, 24, 13, 7, 3],
"G": [6, 7, 11, 16, 23, 29, 31, 29, 23, 16, 11, 7, 6, 56, 121, 223, 348, 455, 498, 455, 348, 223, 121, 56, 4, 4, 5, 6, 10, 16, 23, 28, 31, 28, 23, 16, 10, 6, 5, 4, 4, 3, 3, 4, 5, 9, 14, 21, 26, 29, 26, 21, 14, 9, 5, 4, 3, 3, 2, 2, 2, 4, 7, 12, 18, 24, 26, 24, 18, 12, 7, 4, 2, 2, 2, 4, 6, 9, 14, 19, 24, 26, 24, 19, 14, 9, 6, 4, 3, 3, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 3, 1, 2, 3, 7, 12, 19, 24, 27, 24, 19, 12, 7, 3, 2, 1, 7, 20, 51, 113, 211, 330, 432, 473, 432, 330, 211, 113, 51, 20, 7, 4, 4, 4, 6, 9, 15, 21, 26, 29, 26, 21, 15, 9, 6, 4, 4, 4, 3, 4, 8, 13, 20, 26, 28, 26, 20, 13, 8, 4, 3],
"T": [5, 6, 7, 9, 11, 13, 14, 13, 11, 9, 7, 6, 5, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 5, 10, 24, 60, 130, 241, 376, 492, 538, 492, 376, 241, 130, 60, 24, 10, 5, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 3, 2, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 2, 22, 53, 114, 211, 328, 429, 469, 429, 328, 211, 114, 53, 22, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 3, 1, 1, 2, 3, 5, 7, 9, 10, 9, 7, 5, 3, 2, 1, 1, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 5, 10, 24, 58, 127, 235, 366, 479, 524, 479, 366, 235, 127, 58, 24, 10, 5, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2],
"max": 492,
"peak": [6, 18, 32, 49, 66, 81, 96, 112, 127, 143, 158]
}
},
{
"coordinate": 120,
"dir": "right",
"fill": "rgb(51,255,255)",
"gaps": [
[7, 1]
],
"id": "R1-0000-5678",
"offset": 18,
"outline": "rgb(0,0,0)",
"sequence": "ACGTACGACGT",
"trace": {
"A": [10, 25, 60, 131, 244, 380, 497, 544, 497, 380, 244, 131, 60, 25, 10, 5, 6, 8, 15, 28, 48, 73, 95, 103, 95, 73, 48, 28, 15, 8, 6, 5, 4, 6, 13, 26, 47, 72, 94, 102, 94, 72, 47, 26, 13, 6, 4, 6, 8, 15, 28, 49, 74, 95, 104, 95, 74, 49, 28, 15, 8, 6, 2, 7, 22, 58, 129, 243, 380, 498, 545, 498, 380, 243, 129, 58, 22, 7, 2, 11, 23, 43, 66, 86, 94, 86, 66, 43, 23, 11, 5, 8, 15, 28, 50, 77, 100, 109, 100, 77, 50, 28, 15, 8, 5, 6, 11, 24, 58, 125, 232, 361, 471, 515, 471, 361, 232, 125, 58, 24, 11, 6, 12, 24, 43, 66, 85, 93, 85, 66, 43, 24, 12, 14, 28, 50, 76, 99, 108, 99, 76, 50, 28, 14, 5, 7, 14, 27, 47, 72, 93, 101, 93, 72, 47, 27, 14, 7, 5],
"C": [4, 5, 8, 15, 24, 36, 46, 50, 46, 36, 24, 15, 8, 5, 4, 6, 11, 26, 62, 135, 249, 388, 506, 554, 506, 388, 249, 135, 62, 26, 11, 6, 3, 5, 8, 15, 25, 38, 49, 54, 49, 38, 25, 15, 8, 5, 3, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 1, 1, 3, 6, 13, 24, 37, 49, 53, 49, 37, 24, 13, 6, 3, 1, 1, 53, 117, 219, 342, 447, 489, 447, 342, 219, 117, 53, 4, 5, 8, 15, 25, 36, 47, 51, 47, 36, 25, 15, 8, 5, 4, 5, 5, 7, 10, 17, 28, 41, 53, 57, 53, 41, 28, 17, 10, 7, 5, 5, 57, 124, 231, 360, 471, 516, 471, 360, 231, 124, 57, 9, 16, 27, 40, 51, 55, 51, 40, 27, 16, 9, 4, 6, 9, 16, 27, 41, 52, 57, 52, 41, 27, 16, 9, 6, 4],
"G": [4, 5, 6, 10, 16, 22, 28, 31, 28, 22, 16, 10, 6, 5, 4, 5, 5, 5, 7, 10, 15, 21, 26, 28, 26, 21, 15, 10, 7, 5, 5, 5, 8, 21, 53, 116, 216, 337, 440, 482, 440, 337, 216, 116, 53, 21, 8, 5, 6, 7, 11, 17, 23, 29, 32, 29, 23, 17, 11, 7, 6, 5, 1, 1, 1, 3, 6, 11, 17, 22, 24, 22, 17, 11, 6, 3, 1, 1, 1, 4, 8, 13, 20, 25, 27, 25, 20, 13, 8, 4, 9, 21, 52, 111, 206, 321, 420, 459, 420, 321, 206, 111, 52, 21, 9, 5, 5, 5, 7, 10, 16, 22, 27, 30, 27, 22, 16, 10, 7, 5, 5, 5, 5, 8, 14, 20, 25, 27, 25, 20, 14, 8, 5, 57, 124, 230, 358, 468, 512, 468, 358, 230, 124, 57, 4, 4, 6, 9, 14, 20, 25, 28, 25, 20, 14, 9, 6, 4, 4],
"T": [4, 4, 5, 6, 8, 11, 14, 14, 14, 11, 8, 6, 5, 4, 4, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 3, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 11, 24, 57, 122, 224, 349, 456, 498, 456, 349, 224, 122, 57, 24, 11, 1, 1, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 1, 1, 3, 4, 6, 8, 11, 11, 11, 8, 6, 4, 3, 4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 10, 25, 60, 131, 242, 378, 494, 540, 494, 378, 242, 131, 60, 25, 10],
"max": 512,
"peak": [7, 23, 39, 54, 70, 84, 97, 113, 127, 138, 151]
}
}
],
"highlight": [
{
"color": "rgb(120,120,180)",
"offset": 8,
"width": 1
},
{
"color": "rgb(180,20,180)",
"offset": 22,
"width": 1
}
],
"subtype": "DNA",
"type": "sequence"
}
]
},
config = {
"background": "rgb(245,245,245)",
"graphType": "Genome",
"setMax": 30,
"setMin": 0
},
width = 600,
height = 600
)
# Display the chart in its own Web page
show_in_browser(chart)
Run this notebook:
from canvasxpress.canvas import CanvasXpress
from canvasxpress.plot import graph
graph(
CanvasXpress(
render_to = "genome2",
data = {
"tracks": [
{
"data": [
{
"dir": "right",
"fill": "rgb(51,255,255)",
"id": "Reference Sequence",
"offset": 1,
"outline": "rgb(0,0,0)",
"sequence": "TACGTACGTACGTACGTACGTACGTACGT",
"translate": [-3, -2, -1, 1, 2, 3]
},
{
"coordinate": 50,
"dir": "right",
"fill": "rgb(255,255,51)",
"gaps": [
[4, 2],
[8, 1]
],
"id": "R1-0000-1234",
"offset": 1,
"outline": "rgb(0,0,0)",
"sequence": "TACGCGTAGTACGT",
"trace": {
"A": [15, 27, 47, 72, 93, 101, 93, 72, 47, 27, 15, 54, 120, 224, 350, 459, 502, 459, 350, 224, 120, 54, 3, 4, 6, 12, 24, 43, 67, 86, 94, 86, 67, 43, 24, 12, 6, 4, 3, 13, 26, 45, 69, 89, 97, 89, 69, 45, 26, 13, 13, 26, 46, 70, 92, 100, 92, 70, 46, 26, 13, 5, 12, 26, 48, 75, 99, 108, 99, 75, 48, 26, 12, 5, 2, 4, 10, 22, 41, 64, 83, 91, 83, 64, 41, 22, 10, 4, 2, 22, 55, 122, 226, 353, 462, 505, 462, 353, 226, 122, 55, 22, 4, 11, 24, 45, 70, 92, 100, 92, 70, 45, 24, 11, 4, 2, 3, 6, 13, 28, 50, 78, 102, 111, 102, 78, 50, 28, 13, 6, 3, 2, 6, 11, 26, 62, 135, 249, 388, 506, 553, 506, 388, 249, 135, 62, 26, 11, 6, 6, 8, 14, 26, 45, 68, 87, 95, 87, 68, 45, 26, 14, 8, 6, 11, 23, 43, 67, 88, 96, 88, 67, 43, 23, 11, 5, 6, 8, 15, 28, 48, 73, 94, 102, 94, 73, 48, 28, 15, 8, 6, 5],
"C": [10, 16, 26, 39, 50, 54, 50, 39, 26, 16, 10, 7, 14, 26, 40, 51, 56, 51, 40, 26, 14, 7, 4, 8, 20, 50, 109, 203, 317, 414, 453, 414, 317, 203, 109, 50, 20, 8, 4, 9, 16, 26, 39, 51, 55, 51, 39, 26, 16, 9, 56, 123, 229, 357, 467, 511, 467, 357, 229, 123, 56, 2, 6, 12, 22, 35, 45, 49, 45, 35, 22, 12, 6, 2, 1, 3, 6, 13, 25, 39, 50, 55, 50, 39, 25, 13, 6, 3, 1, 5, 8, 15, 26, 39, 50, 55, 50, 39, 26, 15, 8, 5, 2, 5, 11, 21, 32, 42, 46, 42, 32, 21, 11, 5, 2, 2, 2, 3, 6, 12, 22, 33, 43, 47, 43, 33, 22, 12, 6, 3, 2, 2, 5, 5, 6, 9, 16, 25, 37, 47, 51, 47, 37, 25, 16, 9, 6, 5, 5, 10, 24, 56, 121, 223, 347, 453, 495, 453, 347, 223, 121, 56, 24, 10, 6, 13, 24, 37, 48, 52, 48, 37, 24, 13, 6, 5, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 5],
"G": [7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 4, 7, 13, 19, 25, 27, 25, 19, 13, 7, 4, 3, 3, 3, 5, 8, 14, 20, 25, 27, 25, 20, 14, 8, 5, 3, 3, 3, 56, 122, 226, 353, 461, 504, 461, 353, 226, 122, 56, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 22, 58, 130, 245, 383, 502, 549, 502, 383, 245, 130, 58, 22, 1, 1, 3, 7, 12, 18, 24, 26, 24, 18, 12, 7, 3, 1, 1, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 19, 51, 114, 213, 334, 437, 478, 437, 334, 213, 114, 51, 19, 2, 2, 3, 4, 8, 14, 21, 26, 29, 26, 21, 14, 8, 4, 3, 2, 2, 5, 5, 5, 7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 5, 5, 5, 5, 5, 7, 10, 15, 20, 25, 27, 25, 20, 15, 10, 7, 5, 5, 53, 119, 223, 349, 457, 500, 457, 349, 223, 119, 53, 5, 5, 5, 7, 10, 15, 21, 26, 28, 26, 21, 15, 10, 7, 5, 5, 5],
"T": [62, 135, 249, 388, 507, 554, 507, 388, 249, 135, 62, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 3, 3, 3, 4, 5, 7, 9, 12, 12, 12, 9, 7, 5, 4, 3, 3, 3, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 7, 22, 58, 130, 244, 383, 501, 548, 501, 383, 244, 130, 58, 22, 7, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 3, 8, 21, 54, 119, 222, 347, 454, 497, 454, 347, 222, 119, 54, 21, 8, 3, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 2, 3, 5, 7, 9, 10, 9, 7, 5, 3, 2, 6, 11, 25, 61, 131, 242, 377, 492, 538, 492, 377, 242, 131, 61, 25, 11, 6],
"max": 507,
"peak": [5, 16, 30, 44, 55, 67, 81, 95, 108, 123, 140, 156, 169, 183]
}
},
{
"coordinate": 80,
"dir": "right",
"fill": "rgb(255,255,102)",
"gaps": [
[3, 1],
[10, 1]
],
"id": "R1-0000-2345",
"offset": 6,
"outline": "rgb(0,0,0)",
"sequence": "ACGACGTACGACG",
"trace": {
"A": [49, 110, 206, 323, 424, 463, 424, 323, 206, 110, 49, 3, 5, 12, 24, 45, 69, 90, 98, 90, 69, 45, 24, 12, 5, 3, 5, 7, 14, 28, 49, 75, 97, 105, 97, 75, 49, 28, 14, 7, 5, 5, 10, 25, 61, 132, 245, 382, 499, 545, 499, 382, 245, 132, 61, 25, 10, 5, 7, 13, 27, 48, 74, 96, 105, 96, 74, 48, 27, 13, 7, 4, 6, 13, 25, 46, 70, 91, 100, 91, 70, 46, 25, 13, 6, 4, 4, 7, 14, 27, 49, 76, 99, 108, 99, 76, 49, 27, 14, 7, 4, 3, 8, 22, 57, 125, 234, 366, 479, 524, 479, 366, 234, 125, 57, 22, 8, 3, 5, 8, 15, 30, 52, 80, 104, 113, 104, 80, 52, 30, 15, 8, 5, 7, 13, 25, 44, 66, 86, 94, 86, 66, 44, 25, 13, 7, 23, 58, 127, 236, 368, 482, 527, 482, 368, 236, 127, 58, 23, 3, 4, 6, 13, 26, 47, 73, 95, 104, 95, 73, 47, 26, 13, 6, 4, 3, 5, 6, 9, 16, 30, 52, 79, 102, 111, 102, 79, 52, 30, 16, 9, 6, 5],
"C": [5, 12, 21, 33, 43, 47, 43, 33, 21, 12, 5, 7, 21, 53, 117, 218, 341, 447, 488, 447, 341, 218, 117, 53, 21, 7, 4, 5, 9, 15, 26, 38, 49, 53, 49, 38, 26, 15, 9, 5, 4, 4, 4, 6, 9, 16, 27, 40, 51, 56, 51, 40, 27, 16, 9, 6, 4, 4, 20, 50, 109, 203, 317, 415, 453, 415, 317, 203, 109, 50, 20, 3, 4, 8, 14, 25, 37, 48, 52, 48, 37, 25, 14, 8, 4, 3, 3, 4, 8, 14, 24, 36, 46, 50, 46, 36, 24, 14, 8, 4, 3, 2, 2, 3, 6, 13, 22, 34, 44, 48, 44, 34, 22, 13, 6, 3, 2, 2, 9, 23, 55, 118, 219, 342, 447, 489, 447, 342, 219, 118, 55, 23, 9, 5, 9, 16, 26, 39, 50, 54, 50, 39, 26, 16, 9, 5, 4, 8, 14, 25, 37, 48, 52, 48, 37, 25, 14, 8, 4, 4, 9, 22, 55, 120, 224, 349, 457, 500, 457, 349, 224, 120, 55, 22, 9, 4, 5, 5, 7, 10, 17, 27, 40, 51, 56, 51, 40, 27, 17, 10, 7, 5, 5],
"G": [3, 6, 11, 17, 22, 24, 22, 17, 11, 6, 3, 2, 2, 4, 7, 12, 17, 22, 24, 22, 17, 12, 7, 4, 2, 2, 10, 24, 59, 129, 239, 373, 487, 533, 487, 373, 239, 129, 59, 24, 10, 4, 4, 4, 6, 9, 14, 20, 25, 27, 25, 20, 14, 9, 6, 4, 4, 4, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 9, 23, 59, 129, 239, 374, 489, 534, 489, 374, 239, 129, 59, 23, 9, 3, 3, 5, 8, 13, 18, 23, 25, 23, 18, 13, 8, 5, 3, 3, 2, 2, 2, 4, 7, 12, 17, 22, 24, 22, 17, 12, 7, 4, 2, 2, 2, 4, 4, 6, 9, 14, 19, 24, 26, 24, 19, 14, 9, 6, 4, 4, 22, 52, 113, 209, 325, 425, 465, 425, 325, 209, 113, 52, 22, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 3, 3, 5, 8, 14, 20, 26, 28, 26, 20, 14, 8, 5, 3, 3, 3, 6, 11, 26, 62, 133, 246, 383, 501, 547, 501, 383, 246, 133, 62, 26, 11, 6],
"T": [2, 3, 5, 7, 10, 10, 10, 7, 5, 3, 2, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 4, 4, 4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 4, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 8, 21, 52, 115, 213, 333, 436, 476, 436, 333, 213, 115, 52, 21, 8, 2, 2, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2, 2, 2, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 4, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 4, 3, 4, 5, 7, 9, 11, 12, 11, 9, 7, 5, 4, 3, 3, 3, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 3, 5, 5, 5, 6, 7, 9, 11, 14, 14, 14, 11, 9, 7, 6, 5, 5, 5],
"max": 501,
"peak": [5, 18, 33, 49, 64, 78, 93, 109, 125, 139, 152, 167, 184]
}
},
{
"coordinate": 150,
"dir": "left",
"fill": "rgb(255,51,255)",
"gaps": [
[7, 2]
],
"id": "R1-0000-3456",
"offset": 12,
"offsetLeft": "23",
"outline": "rgb(0,0,0)",
"sequence": "GTACGTATAC",
"trace": {
"A": [4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 2, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2, 2, 8, 20, 50, 110, 205, 320, 418, 457, 418, 320, 205, 110, 50, 20, 8, 5, 5, 5, 7, 9, 11, 13, 14, 13, 11, 9, 7, 5, 5, 5, 8, 23, 59, 130, 243, 380, 498, 545, 498, 380, 243, 130, 59, 23, 8, 1, 1, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 1, 1, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 10, 23, 57, 124, 230, 358, 468, 512, 468, 358, 230, 124, 57, 23, 10, 1, 1, 3, 5, 7, 9, 10, 9, 7, 5, 3, 1, 1],
"C": [4, 4, 6, 10, 15, 21, 27, 29, 27, 21, 15, 10, 6, 4, 4, 2, 3, 4, 8, 14, 21, 26, 29, 26, 21, 14, 8, 4, 3, 2, 3, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 5, 6, 7, 11, 17, 24, 30, 32, 30, 24, 17, 11, 7, 6, 5, 2, 2, 4, 7, 13, 19, 24, 26, 24, 19, 13, 7, 4, 2, 2, 2, 7, 21, 56, 126, 236, 370, 485, 531, 485, 370, 236, 126, 56, 21, 7, 2, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 5, 6, 7, 11, 16, 23, 29, 31, 29, 23, 16, 11, 7, 6, 5, 4, 4, 6, 9, 14, 21, 26, 28, 26, 21, 14, 9, 6, 4, 4, 21, 54, 122, 228, 357, 467, 511, 467, 357, 228, 122, 54, 21],
"G": [10, 24, 57, 125, 231, 360, 470, 514, 470, 360, 231, 125, 57, 24, 10, 2, 3, 7, 13, 23, 35, 46, 50, 46, 35, 23, 13, 7, 3, 2, 3, 5, 8, 15, 26, 39, 51, 55, 51, 39, 26, 15, 8, 5, 3, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 2, 3, 6, 13, 22, 34, 44, 48, 44, 34, 22, 13, 6, 3, 2, 1, 1, 2, 6, 12, 22, 34, 44, 48, 44, 34, 22, 12, 6, 2, 1, 1, 59, 130, 242, 377, 494, 540, 494, 377, 242, 130, 59, 5, 7, 10, 17, 28, 41, 53, 57, 53, 41, 28, 17, 10, 7, 5, 4, 5, 8, 14, 24, 35, 45, 49, 45, 35, 24, 14, 8, 5, 4, 2, 6, 13, 23, 36, 47, 51, 47, 36, 23, 13, 6, 2],
"T": [5, 8, 15, 28, 50, 76, 99, 108, 99, 76, 50, 28, 15, 8, 5, 7, 19, 50, 110, 206, 322, 421, 460, 421, 322, 206, 110, 50, 19, 7, 4, 7, 13, 27, 49, 75, 98, 107, 98, 75, 49, 27, 13, 7, 4, 11, 24, 58, 124, 228, 355, 464, 507, 464, 355, 228, 124, 58, 24, 11, 3, 6, 13, 26, 48, 75, 98, 107, 98, 75, 48, 26, 13, 6, 3, 1, 2, 4, 11, 24, 44, 69, 90, 99, 90, 69, 44, 24, 11, 4, 2, 1, 13, 25, 45, 69, 89, 97, 89, 69, 45, 25, 13, 11, 24, 58, 124, 228, 356, 465, 508, 465, 356, 228, 124, 58, 24, 11, 5, 8, 15, 29, 51, 79, 102, 111, 102, 79, 51, 29, 15, 8, 5, 4, 10, 22, 41, 64, 84, 92, 84, 64, 41, 22, 10, 4],
"max": 511,
"peak": [8, 23, 38, 53, 68, 84, 98, 111, 126, 140],
"reversed": True
}
},
{
"coordinate": 20,
"dir": "right",
"fill": "rgb(255,102,255)",
"gaps": [
[5, 1]
],
"id": "R1-0000-4567",
"offset": 15,
"outline": "rgb(0,0,0)",
"sequence": "CGTACTACGTA",
"trace": {
"A": [9, 16, 29, 51, 78, 100, 110, 100, 78, 51, 29, 16, 9, 15, 28, 50, 77, 100, 109, 100, 77, 50, 28, 15, 4, 5, 7, 13, 25, 44, 67, 86, 94, 86, 67, 44, 25, 13, 7, 5, 4, 4, 8, 21, 53, 115, 214, 335, 438, 479, 438, 335, 214, 115, 53, 21, 8, 4, 2, 3, 5, 11, 23, 42, 65, 85, 93, 85, 65, 42, 23, 11, 5, 3, 2, 8, 15, 29, 52, 80, 103, 113, 103, 80, 52, 29, 15, 8, 4, 9, 23, 57, 126, 233, 365, 477, 522, 477, 365, 233, 126, 57, 23, 9, 4, 2, 4, 10, 23, 42, 66, 87, 95, 87, 66, 42, 23, 10, 4, 2, 3, 5, 12, 25, 46, 71, 93, 101, 93, 71, 46, 25, 12, 5, 3, 4, 5, 8, 14, 28, 50, 76, 99, 108, 99, 76, 50, 28, 14, 8, 5, 4, 19, 49, 108, 202, 316, 413, 452, 413, 316, 202, 108, 49, 19],
"C": [24, 56, 121, 223, 348, 454, 496, 454, 348, 223, 121, 56, 24, 8, 14, 24, 36, 46, 50, 46, 36, 24, 14, 8, 4, 4, 5, 8, 15, 24, 36, 46, 50, 46, 36, 24, 15, 8, 5, 4, 4, 3, 3, 4, 8, 14, 25, 38, 48, 53, 48, 38, 25, 14, 8, 4, 3, 3, 3, 8, 21, 54, 119, 222, 348, 455, 498, 455, 348, 222, 119, 54, 21, 8, 3, 5, 9, 15, 25, 38, 48, 52, 48, 38, 25, 15, 9, 5, 3, 3, 5, 8, 15, 26, 39, 51, 55, 51, 39, 26, 15, 8, 5, 3, 3, 6, 18, 48, 107, 201, 315, 412, 451, 412, 315, 201, 107, 48, 18, 6, 2, 3, 6, 12, 22, 33, 43, 47, 43, 33, 22, 12, 6, 3, 2, 4, 4, 6, 9, 16, 28, 42, 54, 58, 54, 42, 28, 16, 9, 6, 4, 4, 3, 7, 13, 24, 37, 47, 52, 47, 37, 24, 13, 7, 3],
"G": [6, 7, 11, 16, 23, 29, 31, 29, 23, 16, 11, 7, 6, 56, 121, 223, 348, 455, 498, 455, 348, 223, 121, 56, 4, 4, 5, 6, 10, 16, 23, 28, 31, 28, 23, 16, 10, 6, 5, 4, 4, 3, 3, 4, 5, 9, 14, 21, 26, 29, 26, 21, 14, 9, 5, 4, 3, 3, 2, 2, 2, 4, 7, 12, 18, 24, 26, 24, 18, 12, 7, 4, 2, 2, 2, 4, 6, 9, 14, 19, 24, 26, 24, 19, 14, 9, 6, 4, 3, 3, 3, 5, 8, 13, 19, 24, 26, 24, 19, 13, 8, 5, 3, 3, 3, 1, 2, 3, 7, 12, 19, 24, 27, 24, 19, 12, 7, 3, 2, 1, 7, 20, 51, 113, 211, 330, 432, 473, 432, 330, 211, 113, 51, 20, 7, 4, 4, 4, 6, 9, 15, 21, 26, 29, 26, 21, 15, 9, 6, 4, 4, 4, 3, 4, 8, 13, 20, 26, 28, 26, 20, 13, 8, 4, 3],
"T": [5, 6, 7, 9, 11, 13, 14, 13, 11, 9, 7, 6, 5, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 5, 10, 24, 60, 130, 241, 376, 492, 538, 492, 376, 241, 130, 60, 24, 10, 5, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 3, 2, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 2, 22, 53, 114, 211, 328, 429, 469, 429, 328, 211, 114, 53, 22, 3, 3, 3, 3, 5, 7, 9, 11, 12, 11, 9, 7, 5, 3, 3, 3, 3, 1, 1, 2, 3, 5, 7, 9, 10, 9, 7, 5, 3, 2, 1, 1, 2, 2, 2, 4, 6, 8, 10, 11, 10, 8, 6, 4, 2, 2, 2, 5, 10, 24, 58, 127, 235, 366, 479, 524, 479, 366, 235, 127, 58, 24, 10, 5, 2, 3, 4, 6, 8, 10, 11, 10, 8, 6, 4, 3, 2],
"max": 492,
"peak": [6, 18, 32, 49, 66, 81, 96, 112, 127, 143, 158]
}
},
{
"coordinate": 120,
"dir": "right",
"fill": "rgb(51,255,255)",
"gaps": [
[7, 1]
],
"id": "R1-0000-5678",
"offset": 18,
"outline": "rgb(0,0,0)",
"sequence": "ACGTACGACGT",
"trace": {
"A": [10, 25, 60, 131, 244, 380, 497, 544, 497, 380, 244, 131, 60, 25, 10, 5, 6, 8, 15, 28, 48, 73, 95, 103, 95, 73, 48, 28, 15, 8, 6, 5, 4, 6, 13, 26, 47, 72, 94, 102, 94, 72, 47, 26, 13, 6, 4, 6, 8, 15, 28, 49, 74, 95, 104, 95, 74, 49, 28, 15, 8, 6, 2, 7, 22, 58, 129, 243, 380, 498, 545, 498, 380, 243, 129, 58, 22, 7, 2, 11, 23, 43, 66, 86, 94, 86, 66, 43, 23, 11, 5, 8, 15, 28, 50, 77, 100, 109, 100, 77, 50, 28, 15, 8, 5, 6, 11, 24, 58, 125, 232, 361, 471, 515, 471, 361, 232, 125, 58, 24, 11, 6, 12, 24, 43, 66, 85, 93, 85, 66, 43, 24, 12, 14, 28, 50, 76, 99, 108, 99, 76, 50, 28, 14, 5, 7, 14, 27, 47, 72, 93, 101, 93, 72, 47, 27, 14, 7, 5],
"C": [4, 5, 8, 15, 24, 36, 46, 50, 46, 36, 24, 15, 8, 5, 4, 6, 11, 26, 62, 135, 249, 388, 506, 554, 506, 388, 249, 135, 62, 26, 11, 6, 3, 5, 8, 15, 25, 38, 49, 54, 49, 38, 25, 15, 8, 5, 3, 5, 6, 9, 15, 25, 36, 46, 50, 46, 36, 25, 15, 9, 6, 5, 1, 1, 3, 6, 13, 24, 37, 49, 53, 49, 37, 24, 13, 6, 3, 1, 1, 53, 117, 219, 342, 447, 489, 447, 342, 219, 117, 53, 4, 5, 8, 15, 25, 36, 47, 51, 47, 36, 25, 15, 8, 5, 4, 5, 5, 7, 10, 17, 28, 41, 53, 57, 53, 41, 28, 17, 10, 7, 5, 5, 57, 124, 231, 360, 471, 516, 471, 360, 231, 124, 57, 9, 16, 27, 40, 51, 55, 51, 40, 27, 16, 9, 4, 6, 9, 16, 27, 41, 52, 57, 52, 41, 27, 16, 9, 6, 4],
"G": [4, 5, 6, 10, 16, 22, 28, 31, 28, 22, 16, 10, 6, 5, 4, 5, 5, 5, 7, 10, 15, 21, 26, 28, 26, 21, 15, 10, 7, 5, 5, 5, 8, 21, 53, 116, 216, 337, 440, 482, 440, 337, 216, 116, 53, 21, 8, 5, 6, 7, 11, 17, 23, 29, 32, 29, 23, 17, 11, 7, 6, 5, 1, 1, 1, 3, 6, 11, 17, 22, 24, 22, 17, 11, 6, 3, 1, 1, 1, 4, 8, 13, 20, 25, 27, 25, 20, 13, 8, 4, 9, 21, 52, 111, 206, 321, 420, 459, 420, 321, 206, 111, 52, 21, 9, 5, 5, 5, 7, 10, 16, 22, 27, 30, 27, 22, 16, 10, 7, 5, 5, 5, 5, 8, 14, 20, 25, 27, 25, 20, 14, 8, 5, 57, 124, 230, 358, 468, 512, 468, 358, 230, 124, 57, 4, 4, 6, 9, 14, 20, 25, 28, 25, 20, 14, 9, 6, 4, 4],
"T": [4, 4, 5, 6, 8, 11, 14, 14, 14, 11, 8, 6, 5, 4, 4, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 3, 3, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 3, 3, 11, 24, 57, 122, 224, 349, 456, 498, 456, 349, 224, 122, 57, 24, 11, 1, 1, 1, 2, 3, 5, 8, 10, 11, 10, 8, 5, 3, 2, 1, 1, 1, 3, 4, 6, 8, 11, 11, 11, 8, 6, 4, 3, 4, 4, 5, 6, 8, 11, 13, 14, 13, 11, 8, 6, 5, 4, 4, 5, 5, 5, 6, 7, 9, 12, 14, 15, 14, 12, 9, 7, 6, 5, 5, 5, 4, 5, 7, 10, 12, 13, 12, 10, 7, 5, 4, 4, 6, 8, 10, 12, 13, 12, 10, 8, 6, 4, 10, 25, 60, 131, 242, 378, 494, 540, 494, 378, 242, 131, 60, 25, 10],
"max": 512,
"peak": [7, 23, 39, 54, 70, 84, 97, 113, 127, 138, 151]
}
}
],
"highlight": [
{
"color": "rgb(120,120,180)",
"offset": 8,
"width": 1
},
{
"color": "rgb(180,20,180)",
"offset": 22,
"width": 1
}
],
"subtype": "DNA",
"type": "sequence"
}
]
},
config = {
"background": "rgb(245,245,245)",
"graphType": "Genome",
"setMax": 30,
"setMin": 0
},
width = 600,
height = 600
)
)
