Oncoprint Graphs

General parameters for oncoprints

isOncoprint boolean Private
Boolean flag to draw an oncoprint
Default: false
Used in: Heatmap
oncoprintCNA boolean
String to identify the data object to use to draw the copy number alterations; that is the amplifications (which will be colored red) and deletions (which will be colored blue). It MUST be a file with only two categorical levels.
Default: false
Used in: Heatmap
Flag to show column summary in oncoprints.
Default: false
Used in: Heatmap
Position for the heatmap in the oncoprint
Default: bottom
Options: right, bottom, left, top
Used in: Heatmap
Flag to show heatmap instead of oncoprint.
Default: false
Used in: Heatmap
oncoprintMUT boolean
String to identify the data object to use to draw the mutations. For example missense, non-synonymous, truncating, etc. Each level will be colored in a shade of green.
Default: false
Used in: Heatmap
Switch to show variables and samples without any alterations.
Default: true
Used in: Heatmap
Flag to show row summary in oncoprints.
Default: false
Used in: Heatmap
Flag to show heatmap along with the oncoprint.
Default: false
Used in: Heatmap