Genome Browser

General parameters used in genome browser


Feature configurable properties
Default: ['id', 'name', 'label', 'hideName', 'fill', 'outline', 'dir', 'showDir', 'connect', 'offset', 'data', 'subtype', 'quality', 'signalToNoise', 'coordinate', 'sequence', 'trace', 'gaps', 'translate', 'hide', 'counter']
Default color for the strand direction of the feature in the genome browser
Default: rgb(0,0,0)
featureTypeDefault option
Default type for the feature in the genome browser
Default: line
Options: box, bar, heatmap, sequence, triangle, line
genomeResolution option Private
Number to adjust the splines curvature
Default: low
Options: low, medium, high
Maximum length in characters a feature label can have so anything above is truncated.
Default: 30
sequenceFill color
Color for the background when showing sequnces in the box or sequence object in the Genome. The default is to use the background of the object. If specied a valid color then all the background of sequences will be uniform
Default: false
Threshehold used to set te limit when there are too many features in the genome browser
Default: 20
Track configurable properties
Default: ['name', 'hideName', 'hideFeatureNames', 'type', 'height', 'fill', 'outline', 'data', 'hide', 'connect', 'subtracksMax', 'highlight']
Default color for the strand direction of the tracks in the genome browser
Default: rgb(0,0,0)