Heatmap Graphs : General parameters for heatmaps

Click in graph to show relevant configuration - Click in hashtag to open in new page

# heatmapAutoAdjust

Flag to adjust the color spectrum of the heatmaps when zooming in/out. The full spectrum range will be utilized to cover the selcted cells in the heatmap if the flag is set to true
Type: boolean
Default: false
Used in: Heatmap

# heatmapCellBox

Flag to print a box around the heatmap cells
Type: boolean
Default: true
Used in: Heatmap

# heatmapCellBoxColor

Color for the heatmap boxes around the cells
Type: color
Default: rgb(102,102,102)
Used in: Heatmap

# heatmapCellBoxColorHighlight

Color for the highlighted heatmap cells
Type: color
Default: rgb(255,215,0)
Used in: Heatmap

# heatmapCellBoxHighlightWidth

Width for the highlighting heatmap boxes around the cells
Type: float
Default: 1
Used in: Heatmap

# heatmapCellBoxWidth

Width for the heatmap boxes around the cells
Type: float
Default: 1
Used in: Heatmap

# heatmapCollapse

Flag to collapse cells in heatmaps of type circle or hexagon. If true cells are ploted without outline otherwise the outline is the foreground color
Type: boolean
Default: false
Used in: Heatmap

# heatmapType

Type of Heatmap used to overlay a layer on top of an image. Special for spatial transcriptomics and UpSet plots
Type: string
Default: normal
Options: normal, circle, hexagon, upset, correlation
Used in: Heatmap

# smpTitleLabelPosition

Position for sample labels
Type: string
Default: left
Options: left, right
Used in: Heatmap

# varTitleLabelPosition

Position for variable labels
Type: string
Default: bottom
Options: bottom, top
Used in: Heatmap