# featureConfigurableProperties

Feature configurable properties
@features {id:[string];Feature id;[],fill:[color];Color for the feature;[]}
Default: ['id', 'name', 'label', 'hideName', 'fill', 'outline', 'dir', 'showDir', 'connect', 'offset', 'data', 'subtype', 'quality', 'signalToNoise', 'coordinate', 'sequence', 'trace', 'gaps', 'translate', 'hide', 'counter']
Used in: Genome

# featureCoordinateHeight

Default size in pixels of the coordinates height
Default: 12
Used in: Genome

# featureCoordinateShow

Flag use to show coordinates
Default: true
Used in: Genome

# featureDirColor

Default color for the strand direction of the feature in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# featureFillColor

Default color for the fill of the feature in the genome browser
Default: rgb(255,255,255)
Used in: Genome

# featureHeightDefault

featureHeightDefault integer
Default size in pixels of the feature height
Default: 14
Used in: Genome

# featureNameFontColor

Color for the text of the features in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# featureNameFontSize

Size in pixels for the font size of text of the features in the genome browser
Default: 10
Used in: Genome

# featureNameFontStyle

Font style for the feature name.
Default:
Options: , bold, italic, bold italic
Used in: Genome

# featureQualityHeight

Default size in pixels of the quality height
Default: 12
Used in: Genome

# featureQualityShow

Flag use to show quality
Default: true
Used in: Genome

# featureQualityValues

Flag use to show values for the quality
Default: false
Used in: Genome

# featureSignalToNoiseHeight

Default size in pixels of the quality height
Default: 12
Used in: Genome

# featureSignalToNoiseShow

Flag use to show quality
Default: true
Used in: Genome

# featureSignalToNoiseValues

Flag use to show values for the quality
Default: false
Used in: Genome

# featureStaggered

Flag use to stagger the features in the genome panel
Default: false
Used in: Genome

# featureTraceHeight

Default size in pixels of the trace height
Default: 40
Used in: Genome

# featureTraceTrim

Default triming for nucleotide values in the traces (expressed in percent)
Default: 1
Used in: Genome

# featureTracesShow

Flag use to show traces
Default: true
Used in: Genome

# featureTranslateHeight

Default size in pixels of the translation height
Default: 12
Used in: Genome

# featureTranslateShow

Flag use to show tranlation
Default: true
Used in: Genome

# featureTypeDefault

featureTypeDefault option
Default type for the feature in the genome browser
Default: line
Options: box, bar, heatmap, sequence, triangle, line
Used in: Genome

# featureWidthDefault

featureWidthDefault integer
Default size in pixels of the feature width
Default: 3
Used in: Genome

# genomeResolution

genomeResolution option Private
Number to adjust the splines curvature
Default: low
Options: low, medium, high
Used in: Genome

# genomeTicks

genomeTicks integer
Number of ticks in the genome browser
Default: 50
Used in: Genome

# maxFeatureStringLen

Maximum length in characters a feature label can have so anything above is truncated.
Default: 30
Used in: Genome

# periodTicksLabels

Number of ticks to skip between values in the genome browser
Default: 5
Used in: Genome

# sequenceAColor

Color for the adenines and alanines in the genome browser
Default: rgb(0,103,0)
Used in: Genome

# sequenceBColor

Color for the degenerate C/G/T and asparagines in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceCColor

Color for the cytosines and cysteins in the genome browser
Default: rgb(0,0,255)
Used in: Genome

# sequenceDColor

Color for the degenerate A/G/T and aspartic acids in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceEColor

Color for the glutamic acids in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceEndColor

Color for the end codon in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceFColor

Color for the phenylalanines in the genome browser
Default: rgb(0,0,255)
Used in: Genome

# sequenceFill

sequenceFill color
Color for the background when showing sequnces in the box or sequence object in the Genome. The default is to use the background of the object. If specied a valid color then all the background of sequences will be uniform
Default: false
Used in: Genome

# sequenceFontSize

Size in pixels for the font size of text of the sequence in the genome browser
Default: 10
Used in: Genome

# sequenceFontStyle

Font style for the sequences.
Default:
Options: , bold, italic, bold italic
Used in: Genome

# sequenceGAPColor

Color for the deletions, insertions and gaps in the genome browser
Default: rgb(255,0,255)
Used in: Genome

# sequenceGColor

Color for the guanines and glycines in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceHColor

Color for the degenerate A/C/T and histidines in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceIColor

Color for the isoleucines in the genome browser
Default: rgb(0,103,0)
Used in: Genome

# sequenceKColor

Color for the degenerate G/T and lysines in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceLColor

Color for the leucines in the genome browser
Default: rgb(0,103,0)
Used in: Genome

# sequenceMColor

Color for the degenerate A/G and methionines in the genome browser
Default: rgb(0,103,0)
Used in: Genome

# sequenceNColor

Color for the degenerate A/C/G/T and asparagines in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequencePColor

Color for the prolines in the genome browser
Default: rgb(255,165,0)
Used in: Genome

# sequenceQColor

Color for the glutamines in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceRColor

Color for the degenerate A/G and arginines in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceSColor

Color for the degenerate G/C and serines in the genome browser
Default: rgb(255,165,0)
Used in: Genome

# sequenceStartColor

Color for the start codon in the genome browser
Default: rgb(0,204,0)
Used in: Genome

# sequenceTColor

Color for the thymidines and threonines in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceUColor

Color for the uracils in the genome browser
Default: rgb(255,0,0)
Used in: Genome

# sequenceVColor

Color for the degenerate A/C/G and valines in the genome browser
Default: rgb(0,103,0)
Used in: Genome

# sequenceWColor

Color for the degenerate A/T and tryptophans in the genome browser
Default: rgb(0,0,255)
Used in: Genome

# sequenceXColor

Color for the any aminoacid code in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# sequenceYColor

Color for the degenerate C/T and tyrosines in the genome browser
Default: rgb(0,0,255)
Used in: Genome

# sequenceZColor

Color for the glutamines in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# showFeatureNameThereshold

Threshehold used to set te limit when there are too many features in the genome browser
Default: 20
Used in: Genome

# subtracksMaxDefault

subtracksMaxDefault integer
Maximum number of subtracks to show in a track
Default: 8
Used in: Genome

# trackConfigurableProperties

Track configurable properties
@tracks {name:[string];Track name;[]}
Default: ['name', 'hideName', 'hideFeatureNames', 'type', 'height', 'fill', 'outline', 'data', 'hide', 'connect', 'subtracksMax', 'highlight']
Used in: Genome

# trackDirColor

Default color for the strand direction of the tracks in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# trackFillColor

Default color for the fill of the tracks in the genome browser
Default: rgb(255,255,255)
Used in: Genome

# trackNameFontColor

Color for the text of the tracks in the genome browser
Default: rgb(0,0,0)
Used in: Genome

# trackNameFontSize

Size in pixels for the font size of text of the tracks in the genome browser
Default: 10
Used in: Genome

# trackNameFontStyle

Font style for the track name.
Default:
Options: , bold, italic, bold italic
Used in: Genome

# wireColor

wireColor color
Color for the ticks in the genome browser
Default: rgba(204,204,204,0.1)
Used in: Genome